C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152946 Ldb1-002 ENSMUSG00000025223 10090 - 19:46032593-46045214 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000152946
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000152946 22.692±5.41 12.267±3.32 25.472±0.41 26.011±0.76 21.104±2.34 13.222±1.77 8.097±0.27 9.890±1.40 11.986±8.86 20.067±4.46 4.011±0.72 25.104±6.28 13.572±6.43 2.412±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099F CIL_00099F_0002 VISTA 19:45434459-46035623
CIL_00099E CIL_00099E_0002 VISTA 19:45446900-46047683
CIL_0005WD CIL_0005WD_0002 CGP 19:46003478-46045214
CIL_00058F CIL_00058F_0002 CGP 19:46032593-46072915

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000989 IPI transcription factor binding transcription factor activity
GO:0001158 IDA enhancer sequence-specific DNA binding
GO:0001702 IMP gastrulation with mouth forming second
GO:0001942 IGI hair follicle development
GO:0003682 IDA chromatin binding
GO:0003712 IEA transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0009948 IMP anterior/posterior axis specification
GO:0010669 IGI epithelial structure maintenance
GO:0016055 IMP Wnt signaling pathway
GO:0021549 IMP cerebellum development
GO:0021702 IMP cerebellar Purkinje cell differentiation
GO:0022607 IGI cellular component assembly
GO:0030274 IEA LIM domain binding
GO:0035019 IGI somatic stem cell maintenance
GO:0042803 IDA protein homodimerization activity
GO:0043234 IDA protein complex
GO:0043621 IPI protein self-association
GO:0045785 IGI positive regulation of cell adhesion
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361198 LDB1-001 protein_coding Homo_sapiens 0 2316
ENST00000425280 LDB1-201 protein_coding Homo_sapiens 0 2776
ENST00000461873 LDB1-002 processed_transcript Homo_sapiens 0 512
ENST00000490751 LDB1-003 processed_transcript Homo_sapiens 0 1103

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