C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TSEN15 tRNA splicing endonuclease subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361641 TSEN15-001 ENSG00000198860 9606 + 1:184051677-184074212 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361641
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361641 1.976±0.00 4.425±0.00 3.295±0.31 3.260±0.50 4.004±0.00 2.463±1.63 2.320±0.75 1.567±1.06 1.602±0.00 1.904±0.65 3.538±1.45 4.753±1.11 4.747±3.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BM CIL_0001BM_0002 CGP 1:184051677-184629020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0005634 IEA nucleus
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015124 Tsen15-001 protein_coding Mus_musculus 0 640
ENSMUST00000096101 Gm5874-201 processed_pseudogene Mus_musculus 0 584
ENSMUST00000159717 Tsen15-004 retained_intron Mus_musculus 0 459
ENSMUST00000159270 Tsen15-005 retained_intron Mus_musculus 0 418
ENSMUST00000162371 Tsen15-002 protein_coding Mus_musculus 0 355
ENSMUST00000161717 Tsen15-003 retained_intron Mus_musculus 0 276

Loading