C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TSEN15 tRNA splicing endonuclease subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198860 TSEN15 9606 + 1:184051677-184074212 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361641 TSEN15-001 184051677-184074212 protein_coding
  ENST00000367518 TSEN15-005 184051733-184070812 retained_intron
  ENST00000423085 TSEN15-006 184051746-184074206 protein_coding
  ENST00000457455 TSEN15-004 184054361-184055069 retained_intron
  ENST00000462677 TSEN15-003 184051760-184073846 nonsense_mediated_decay
  ENST00000485209 TSEN15-002 184051679-184072980 nonsense_mediated_decay
  ENST00000533373 TSEN15-007 184051726-184073023 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361641ENST00000423085ENST00000457455ENST00000533373
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361641 1.976±0.00 4.425±0.00 3.295±0.31 3.260±0.50 4.004±0.00 2.463±1.63 2.320±0.75 1.567±1.06 1.602±0.00 1.904±0.65 3.538±1.45 4.753±1.11 4.747±3.07
ENST00000423085 2.732±0.00 3.640±0.00 3.202±2.23 2.372±0.00 1.881±0.46 0.738±0.00 2.548±0.00 0.693±0.00 0.970±0.36 2.352±0.00 4.674±0.68 2.825±0.40 2.597±0.45
ENST00000457455 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.274±0.00 N/A N/A N/A
ENST00000533373 N/A N/A N/A N/A N/A 2.878±0.00 3.638±0.00 2.637±0.21 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BM CIL_0001BM_0002 CGP 1:184051677-184629020

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0005634 IEA nucleus
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069280 tsen15 tRNA splicing endonuclease 15 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000014980 Tsen15 tRNA splicing endonuclease 15 homolog (S. cerevisiae) protein_coding Mus_musculus

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