C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SFT2 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361731 SFT2D1-002 ENSG00000198818 9606 - 6:166319728-166342591 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361731
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361731 7.775±0.00 7.757±0.00 1.027±0.00 10.906±2.06 6.822±3.69 7.447±1.09 3.683±1.60 20.125±0.00 4.534±1.45 6.730±3.44 2.923±0.10 14.153±5.37 13.669±7.60 8.354±6.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094V CIL_00094V_0001 VISTA 6:166171962-166774036

Gene Ontology

GO IDEvidence TypeGO Description
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000154553 Sft2d1-001 protein_coding Mus_musculus 0 545
ENSMUST00000093169 Gm12166-001 protein_coding Mus_musculus 0 545
ENSMUST00000135627 Sft2d1-006 processed_transcript Mus_musculus 0 449
ENSMUST00000150728 Sft2d1-003 retained_intron Mus_musculus 0 442
ENSMUST00000153406 Sft2d1-007 retained_intron Mus_musculus 0 435
ENSMUST00000145276 Sft2d1-002 nonsense_mediated_decay Mus_musculus 0 289
ENSMUST00000154156 Gm12166-002 processed_transcript Mus_musculus 0 289
ENSMUST00000135964 Sft2d1-008 retained_intron Mus_musculus 0 287
ENSMUST00000130782 Sft2d1-004 nonsense_mediated_decay Mus_musculus 7.00649e-45 185

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