C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: translin-associated factor X
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075896 Tsnax-201 ENSMUSG00000056820 10090 + 8:125012997-125034192 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075896
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075896 25.878±5.12 21.014±1.57 35.735±2.25 44.944±5.70 17.996±0.82 15.257±2.48 22.000±2.82 16.842±2.85 17.757±8.55 21.080±2.43 37.434±1.04 26.336±5.32 19.153±5.58 13.769±6.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AY CIL_0006AY_0002 CGP 8:124908596-125034192
CIL_00087G CIL_00087G_0002 VISTA 8:124917043-125519851
CIL_0006B1 CIL_0006B1_0002 CGP 8:125012997-125261858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0030154 IEA cell differentiation
GO:0031687 IEA A2A adenosine receptor binding
GO:0032403 IEA protein complex binding
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366639 TSNAX-001 protein_coding Homo_sapiens 0 926
ENST00000413309 TSNAX-003 protein_coding Homo_sapiens 0 418
ENST00000475168 TSNAX-002 retained_intron Homo_sapiens 0 407
ENST00000476913 TSNAX-004 retained_intron Homo_sapiens 0 387
ENST00000602567 TSNAX-DISC1-005 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000602634 TSNAX-DISC1-001 nonsense_mediated_decay Homo_sapiens 0 409
ENST00000602825 TSNAX-005 processed_transcript Homo_sapiens 0 411
ENST00000602885 TSNAX-DISC1-004 nonsense_mediated_decay Homo_sapiens 4e-26 124
ENST00000602956 TSNAX-DISC1-002 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000602962 TSNAX-DISC1-003 nonsense_mediated_decay Homo_sapiens 0 532

Loading