C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366957 SMYD2-001 ENSG00000143499 9606 + 1:214281233-214337131 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366957
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366957 5.687±0.00 7.427±0.00 9.197±2.37 4.071±2.17 3.486±1.91 38.172±23.62 2.565±0.96 3.863±0.00 4.991±0.00 5.508±1.24 5.301±2.51 19.018±4.36 6.973±2.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Q CIL_00089Q_0001 VISTA 1:213807252-214408737

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000993 ISS RNA polymerase II core binding
GO:0002039 IPI p53 binding
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005829 ISS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0008285 ISS negative regulation of cell proliferation
GO:0010452 IEA histone H3-K36 methylation
GO:0016279 IDA protein-lysine N-methyltransferase activity
GO:0016571 IEA histone methylation
GO:0018026 IDA peptidyl-lysine monomethylation
GO:0018027 ISS peptidyl-lysine dimethylation
GO:0043516 IMP regulation of DNA damage response, signal transduction by p53 class mediator
GO:0046872 IEA metal ion binding
GO:0046975 ISS histone methyltransferase activity (H3-K36 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027897 Smyd2-001 protein_coding Mus_musculus 0 1509
ENSMUST00000130804 Smyd2-003 processed_transcript Mus_musculus 0 861
ENSMUST00000144452 Smyd2-002 retained_intron Mus_musculus 0 652

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