C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027897 Smyd2-001 ENSMUSG00000026603 10090 - 1:189880492-189922363 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027897
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027897 20.877±4.70 26.029±1.43 24.740±4.94 30.439±20.19 20.456±6.30 11.780±2.66 31.004±5.69 11.549±0.69 11.282±3.50 7.629±0.72 121.196±7.86 32.947±8.51 35.454±16.14 6.995±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Q CIL_00089Q_0002 VISTA 1:189761322-190362331
CIL_0003Z6 CIL_0003Z6_0002 CGP 1:189880492-190170714

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000993 IDA RNA polymerase II core binding
GO:0002039 IEA p53 binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0008285 IDA negative regulation of cell proliferation
GO:0010452 IDA histone H3-K36 methylation
GO:0016279 ISS protein-lysine N-methyltransferase activity
GO:0016571 IDA histone methylation
GO:0018026 ISS peptidyl-lysine monomethylation
GO:0018027 IDA peptidyl-lysine dimethylation
GO:0043516 ISS regulation of DNA damage response, signal transduction by p53 class mediator
GO:0046872 IEA metal ion binding
GO:0046975 IDA histone methyltransferase activity (H3-K36 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366957 SMYD2-001 protein_coding Homo_sapiens 0 1509
ENST00000415093 SMYD2-201 protein_coding Homo_sapiens 0 900
ENST00000416415 SMYD2-006 protein_coding Homo_sapiens 0 370
ENST00000460580 SMYD2-002 processed_transcript Homo_sapiens 0 1247
ENST00000471645 SMYD2-004 retained_intron Homo_sapiens 0 1046
ENST00000484459 SMYD2-005 processed_transcript Homo_sapiens 0 398
ENST00000491455 SMYD2-003 processed_transcript Homo_sapiens 0 1297

Loading