C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130804 Smyd2-003 ENSMUSG00000026603 10090 - 1:189880494-189889002 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000130804
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000130804 10.015±1.36 7.287±0.00 8.467±0.00 10.662±3.18 5.694±0.00 14.875±5.20 6.087±0.35 4.722±1.83 2.163±0.24 17.527±4.67 14.560±2.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Q CIL_00089Q_0002 VISTA 1:189761322-190362331
CIL_0003Z6 CIL_0003Z6_0002 CGP 1:189880492-190170714

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366957 SMYD2-001 protein_coding Homo_sapiens 0 861
ENST00000415093 SMYD2-201 protein_coding Homo_sapiens 0 252
ENST00000416415 SMYD2-006 protein_coding Homo_sapiens 0 370
ENST00000460580 SMYD2-002 processed_transcript Homo_sapiens 0 861
ENST00000471645 SMYD2-004 retained_intron Homo_sapiens 0 398
ENST00000484459 SMYD2-005 processed_transcript Homo_sapiens 0 414
ENST00000491455 SMYD2-003 processed_transcript Homo_sapiens 0 649

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