C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S6 kinase, 52kDa, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366960 RPS6KC1-001 ENSG00000136643 9606 + 1:213051255-213274773 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000366960
Transcript ID Adipose Bladder Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000366960 0.673±0.00 0.204±0.00 0.365±0.00 0.990±0.00 0.173±0.00 1.014±0.00 0.162±0.00 1.344±0.42 0.534±0.17 1.437±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092Y CIL_00092Y_0001 VISTA 1:213024769-213627791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005769 IDA early endosome
GO:0006468 IEA protein phosphorylation
GO:0007165 TAS signal transduction
GO:0016020 IEA membrane
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0035091 IEA phosphatidylinositol binding
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061611 Rps6kc1-001 protein_coding Mus_musculus 0 2303
ENSMUST00000159367 Rps6kc1-006 nonsense_mediated_decay Mus_musculus 0 2126
ENSMUST00000162500 Rps6kc1-002 retained_intron Mus_musculus 0 1522
ENSMUST00000160889 Rps6kc1-005 nonsense_mediated_decay Mus_musculus 0 1146
ENSMUST00000159823 Rps6kc1-003 retained_intron Mus_musculus 0 857
ENSMUST00000159624 Rps6kc1-004 nonsense_mediated_decay Mus_musculus 0 734
ENSMUST00000160891 Rps6kc1-009 retained_intron Mus_musculus 0 244
ENSMUST00000159066 Rps6kc1-007 protein_coding Mus_musculus 6e-27 128

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