C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: opticin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367222 OPTC-001 ENSG00000188770 9606 + 1:203494143-203508864 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonOvaryTestisENST00000367222
Transcript ID Adrenal Breast Colon Ovary Testis
ENST00000367222 0.070±0.00 0.137±0.00 0.018±0.00 0.067±0.00 0.129±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 TAS extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0016525 IEA negative regulation of angiogenesis
GO:0031012 IEA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000124051 Optc-001 protein_coding Mus_musculus 0 634
ENSMUST00000149380 Optc-003 protein_coding Mus_musculus 0 433
ENSMUST00000153617 Optc-002 protein_coding Mus_musculus 0 433
ENSMUST00000126123 Optc-004 protein_coding Mus_musculus 0 398
ENSMUST00000124245 Optc-005 retained_intron Mus_musculus 0 289

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