| Transcript ID | Brain | Colon | Heart | Muscle |
|---|---|---|---|---|
| ENST00000367265 | 0.496±0.00 | 0.525±0.00 | 0.107±0.00 | 0.260±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | lysine (K)-specific demethylase 5B | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000367265  |
KDM5B-001 |
ENSG00000117139 |
9606 | - |
1:202724491-202809470  |
protein_coding |
Expression Patterns
|
Conserved Regions |
|---|
| Gene is not located within a conserved region. |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IEA | DNA binding |
| GO:0003700 | TAS | sequence-specific DNA binding transcription factor activity |
| GO:0003714 | IDA | transcription corepressor activity |
| GO:0005515 | IPI:IEA | protein binding |
| GO:0005622 | IEA | intracellular |
| GO:0005634 | IEA | nucleus |
| GO:0006351 | IEA | transcription, DNA-templated |
| GO:0008270 | IEA | zinc ion binding |
| GO:0016706 | IEA | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors |
| GO:0032453 | IEA | histone demethylase activity (H3-K4 specific) |
| GO:0034647 | IDA | histone demethylase activity (H3-trimethyl-K4 specific) |
| GO:0034648 | IDA | histone demethylase activity (H3-dimethyl-K4 specific) |
| GO:0034720 | IDA | histone H3-K4 demethylation |
| GO:0034721 | IDA | histone H3-K4 demethylation, trimethyl-H3-K4-specific |
| GO:0045892 | IDA | negative regulation of transcription, DNA-templated |
| GO:0055114 | IEA | oxidation-reduction process |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000047714
|
Kdm5b-001 | protein_coding | Mus_musculus | 0 | 6488 |
|
ENSMUST00000112198
|
Kdm5b-003 | protein_coding | Mus_musculus | 0 | 5616 |
|
ENSMUST00000112197
|
Kdm5b-002 | retained_intron | Mus_musculus | 0 | 2207 |
|
ENSMUST00000133725
|
Kdm5b-004 | retained_intron | Mus_musculus | 0 | 612 |
|
ENSMUST00000082177
|
Kdm5c-004 | protein_coding | Mus_musculus | 0 | 420 |
|
ENSMUST00000112588
|
Kdm5c-001 | protein_coding | Mus_musculus | 0 | 420 |
|
ENSMUST00000112584
|
Kdm5c-002 | protein_coding | Mus_musculus | 0 | 420 |
|
ENSMUST00000186128
|
Kdm5b-005 | retained_intron | Mus_musculus | 0 | 226 |
