C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pogo transposable element with KRAB domain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367876 POGK-001 ENSG00000143157 9606 + 1:166839457-166856344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartLiverLungMuscleOvaryPlacentaTestisENST00000367876
Transcript ID Adrenal Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000367876 0.718±0.00 0.885±0.03 0.744±0.00 0.361±0.01 1.137±0.00 0.834±0.00 2.331±1.34 3.392±0.00 2.449±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169324 Pogk-203 protein_coding Mus_musculus 0 2134
ENSMUST00000135673 Pogk-001 protein_coding Mus_musculus 0 2104
ENSMUST00000128861 Pogk-003 protein_coding Mus_musculus 0 2089
ENSMUST00000131487 Pogk-002 protein_coding Mus_musculus 0 2089
ENSMUST00000148243 Pogk-004 nonsense_mediated_decay Mus_musculus 0 1707
ENSMUST00000127596 Pogk-005 protein_coding Mus_musculus 0 291

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