C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal RNA adenine dimethylase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368216 RRNAD1-001 ENSG00000143303 9606 + 1:156728475-156736949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000368216
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000368216 5.230±0.00 6.283±0.00 1.265±0.00 7.142±0.00 5.059±0.00 6.898±0.00 2.030±0.00 7.576±0.00 3.758±0.00 6.340±0.00 2.737±2.21 12.369±1.67 7.560±1.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492
CIL_0000CW CIL_0000CW_0002 CGP 1:156721891-156736960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000179 IEA rRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0031167 IEA rRNA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005016 Rrnad1-001 protein_coding Mus_musculus 0 1544
ENSMUST00000160074 Rrnad1-006 protein_coding Mus_musculus 0 1256
ENSMUST00000159091 Rrnad1-004 retained_intron Mus_musculus 0 1210
ENSMUST00000159831 Rrnad1-002 retained_intron Mus_musculus 0 994
ENSMUST00000160648 Rrnad1-003 nonsense_mediated_decay Mus_musculus 0 922
ENSMUST00000164439 Rrnad1-012 nonsense_mediated_decay Mus_musculus 0 780
ENSMUST00000160143 Rrnad1-010 protein_coding Mus_musculus 0 734
ENSMUST00000168070 Rrnad1-011 retained_intron Mus_musculus 0 627
ENSMUST00000161014 Rrnad1-005 retained_intron Mus_musculus 0 486
ENSMUST00000160068 Rrnad1-009 processed_transcript Mus_musculus 0 364
ENSMUST00000161471 Rrnad1-007 processed_transcript Mus_musculus 0 217

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