C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: soc-2 suppressor of clear homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369452 SHOC2-001 ENSG00000108061 9606 + 10:110919547-111013667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369452
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369452 13.550±0.00 5.989±0.00 3.742±0.00 11.601±0.92 11.425±0.41 10.084±0.21 5.410±1.12 5.356±1.65 6.004±3.14 8.595±3.34 4.471±3.21 7.921±2.88 3.692±0.63 12.462±3.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0001 VISTA 10:110384599-110985964
CIL_0006FA CIL_0006FA_0001 CGP 10:110919547-111080907

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000164 IDA protein phosphatase type 1 complex
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007265 NAS Ras protein signal transduction
GO:0008543 NAS fibroblast growth factor receptor signaling pathway
GO:0019888 TAS protein phosphatase regulator activity
GO:0019903 IDA protein phosphatase binding
GO:0046579 IMP positive regulation of Ras protein signal transduction
GO:0050790 TAS regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025932 Shoc2-201 protein_coding Mus_musculus 0 3557
ENSMUST00000169861 Shoc2-202 protein_coding Mus_musculus 0 3557
ENSMUST00000120183 Gm13590-001 processed_pseudogene Mus_musculus 0 496

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