C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dyskeratosis congenita 1, dyskerin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369550 DKC1-001 ENSG00000130826 9606 + X:154762756-154777689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369550
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369550 10.917±0.00 20.100±0.00 7.631±0.00 5.274±3.32 5.393±3.74 3.235±2.51 7.057±6.01 4.713±2.77 6.336±0.00 8.318±0.00 17.820±8.65 13.558±2.66 18.185±2.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LH CIL_0003LH_0001 CGP X:154675249-154777689
CIL_0003LI CIL_0003LI_0001 CGP X:154762742-154821007

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000723 TAS telomere maintenance
GO:0001522 IEA pseudouridine synthesis
GO:0003720 IDA telomerase activity
GO:0003723 TAS:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005697 IDA telomerase holoenzyme complex
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0006396 TAS:IEA RNA processing
GO:0007004 TAS telomere maintenance via telomerase
GO:0008283 TAS cell proliferation
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033776 Dkc1-001 protein_coding Mus_musculus 0 1877
ENSMUST00000151327 Dkc1-007 retained_intron Mus_musculus 0 1138
ENSMUST00000131155 Dkc1-011 protein_coding Mus_musculus 0 929
ENSMUST00000117596 Gm14035-001 processed_pseudogene Mus_musculus 0 819
ENSMUST00000154936 Dkc1-008 processed_transcript Mus_musculus 0 815
ENSMUST00000154422 Dkc1-009 processed_transcript Mus_musculus 0 704
ENSMUST00000140609 Dkc1-006 nonsense_mediated_decay Mus_musculus 0 593
ENSMUST00000131867 Dkc1-004 processed_transcript Mus_musculus 0 571
ENSMUST00000122236 Gm13776-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000153844 Dkc1-012 nonsense_mediated_decay Mus_musculus 0 475
ENSMUST00000132000 Dkc1-002 protein_coding Mus_musculus 0 418
ENSMUST00000145222 Dkc1-005 retained_intron Mus_musculus 0 411
ENSMUST00000135389 Dkc1-003 retained_intron Mus_musculus 0 366
ENSMUST00000137286 Dkc1-010 retained_intron Mus_musculus 0 200

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