C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi brefeldin A resistant guanine nucleotide exchange factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369983 GBF1-001 ENSG00000107862 9606 + 10:102245532-102382899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369983
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369983 11.585±0.00 5.756±0.00 1.887±0.00 7.910±3.50 6.101±3.23 2.875±1.00 13.302±0.00 14.906±0.00 4.364±2.36 3.557±2.80 18.255±13.19 9.394±5.28 8.373±4.19 20.376±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WI CIL_0005WI_0001 CGP 10:102230186-102382899
CIL_0005WJ CIL_0005WJ_0001 CGP 10:102245532-102402529

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005086 IBA:IEA ARF guanyl-nucleotide exchange factor activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005777 IEA peroxisome
GO:0005788 IEA endoplasmic reticulum lumen
GO:0005794 IDA Golgi apparatus
GO:0005795 IEA Golgi stack
GO:0005801 IEA cis-Golgi network
GO:0005802 IBA trans-Golgi network
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0016192 IBA vesicle-mediated transport
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026254 Gbf1-001 protein_coding Mus_musculus 0 7468
ENSMUST00000176992 Gbf1-002 protein_coding Mus_musculus 0 6981
ENSMUST00000177406 Gbf1-005 retained_intron Mus_musculus 0 3258
ENSMUST00000175868 Gbf1-003 retained_intron Mus_musculus 0 1136
ENSMUST00000176422 Gbf1-004 retained_intron Mus_musculus 0 1011
ENSMUST00000176576 Gbf1-012 retained_intron Mus_musculus 0 737
ENSMUST00000175706 Gbf1-015 retained_intron Mus_musculus 0 732
ENSMUST00000177512 Gbf1-014 nonsense_mediated_decay Mus_musculus 0 593
ENSDART00000127779 GBF1 (2 of 2)-201 protein_coding Danio_rerio 0 555
ENSMUST00000176525 Gbf1-009 processed_transcript Mus_musculus 0 551
ENSMUST00000175878 Gbf1-008 retained_intron Mus_musculus 0 523
ENSMUST00000175747 Gbf1-011 nonsense_mediated_decay Mus_musculus 0 501
ENSMUST00000176046 Gbf1-010 retained_intron Mus_musculus 0 424
ENSMUST00000176853 Gbf1-013 processed_transcript Mus_musculus 0 420
ENSDART00000146592 GBF1 (1 of 2)-002 protein_coding Danio_rerio 0 414
ENSMUST00000176574 Gbf1-006 protein_coding Mus_musculus 0 363
ENSDART00000046792 GBF1 (1 of 2)-201 protein_coding Danio_rerio 0 339
ENSMUST00000176355 Gbf1-007 processed_transcript Mus_musculus 5e-33 148

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