C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370314 GABRA3-001 ENSG00000011677 9606 - X:152166234-152451358 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonOvaryPlacentaTestisENST00000370314
Transcript ID Adrenal Brain Breast Colon Ovary Placenta Testis
ENST00000370314 0.004±0.00 7.056±0.17 0.015±0.00 0.042±0.00 0.014±0.01 1.069±0.16 0.574±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000115 CIL_000115_0001 CGP X:152166234-152657534

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0007268 TAS synaptic transmission
GO:0008503 TAS benzodiazepine receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0055085 TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055966 Gabra3-001 protein_coding Mus_musculus 0 2244
ENSMUST00000114554 Gabra3-002 protein_coding Mus_musculus 0 2091
ENSMUST00000137517 Gabra3-003 processed_transcript Mus_musculus 0 272

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