C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370457 AFF2-202 ENSG00000155966 9606 + X:148500619-149000663 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverLungPlacentaTestisENST00000370457
Transcript ID Adrenal Brain Colon Kidney Liver Lung Placenta Testis
ENST00000370457 0.012±0.00 0.488±0.07 0.008±0.00 0.048±0.00 0.124±0.00 0.621±0.00 0.570±0.00 0.200±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PX CIL_0007PX_0001 VISTA X:148447492-149048635
CIL_0000PK CIL_0000PK_0002 CGP X:148500619-149521096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002151 ISS G-quadruplex RNA binding
GO:0006397 IEA mRNA processing
GO:0007420 TAS brain development
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0043484 IMP regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033532 Aff2-001 protein_coding Mus_musculus 0 4909
ENSMUST00000143097 Aff2-002 processed_transcript Mus_musculus 0 1633
ENSMUST00000139977 Aff2-004 processed_transcript Mus_musculus 0 584
ENSMUST00000151662 Aff2-003 retained_intron Mus_musculus 0 532

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