C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370458 AFF2-002 ENSG00000155966 9606 + X:148501009-148904377 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungOvaryENST00000370458
Transcript ID Brain Colon Heart Kidney Liver Lung Ovary
ENST00000370458 3.126±0.00 0.415±0.00 0.074±0.00 0.026±0.00 0.641±0.00 1.787±0.00 1.265±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PX CIL_0007PX_0001 VISTA X:148447492-149048635
CIL_0000PK CIL_0000PK_0002 CGP X:148500619-149521096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002151 ISS G-quadruplex RNA binding
GO:0006397 IEA mRNA processing
GO:0007420 TAS brain development
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0043484 IMP regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143097 Aff2-002 processed_transcript Mus_musculus 0 1764
ENSMUST00000033532 Aff2-001 protein_coding Mus_musculus 0 1633
ENSMUST00000139977 Aff2-004 processed_transcript Mus_musculus 0 569

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