C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165774 Gbp2-001 ENSMUSG00000028270 10090 + 3:142620602-142638008 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165774 22.335±2.02 10.132±1.06 43.444±9.66 0.211±0.12 20.058±4.94 7.565±0.90 4.514±0.92 4.692±0.29 2.074±0.71 17.470±1.26 1.664±0.41 12.061±3.32 1.940±1.50 0.247±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_0009 CGP 3:142560052-142638008

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0006184 IEA GTP catabolic process
GO:0016020 IEA membrane
GO:0020005 IDA symbiont-containing vacuole membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0035458 IDA cellular response to interferon-beta
GO:0042832 IDA defense response to protozoan
GO:0044406 IDA adhesion of symbiont to host
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0071346 IDA cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000235878 GBP3-002 nonsense_mediated_decay Homo_sapiens 0 464
ENST00000294671 GBP7-001 protein_coding Homo_sapiens 0 418
ENST00000370466 GBP2-002 protein_coding Homo_sapiens 0 1171
ENST00000370473 GBP1-001 protein_coding Homo_sapiens 0 872
ENST00000370481 GBP3-008 protein_coding Homo_sapiens 0 841
ENST00000370482 GBP3-009 retained_intron Homo_sapiens 0 571
ENST00000463660 GBP2-003 processed_transcript Homo_sapiens 0.0000004 62
ENST00000464839 GBP2-001 nonsense_mediated_decay Homo_sapiens 0 1171
ENST00000469194 GBP1-002 processed_transcript Homo_sapiens 0 215
ENST00000475853 GBP3-004 processed_transcript Homo_sapiens 0 228
ENST00000489444 GBP3-005 nonsense_mediated_decay Homo_sapiens 0 582
ENST00000493594 GBP3-003 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000564037 GBP3-011 retained_intron Homo_sapiens 0 228
ENST00000564665 GBP3-010 protein_coding Homo_sapiens 0 353
ENST00000568006 GBP3-012 nonsense_mediated_decay Homo_sapiens 0 228

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