C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169572 Gbp2-002 ENSMUSG00000028270 10090 + 3:142620635-142630585 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENSMUST00000169572
Transcript ID Brain Testis
ENSMUST00000169572 0.076±0.00 0.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_0009 CGP 3:142560052-142638008

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0020005 IDA symbiont-containing vacuole membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0035458 IDA cellular response to interferon-beta
GO:0042832 IDA defense response to protozoan
GO:0044406 IDA adhesion of symbiont to host
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0071346 IDA cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000235878 GBP3-002 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000294671 GBP7-001 protein_coding Homo_sapiens 0 274
ENST00000370466 GBP2-002 protein_coding Homo_sapiens 0 329
ENST00000370473 GBP1-001 protein_coding Homo_sapiens 0 340
ENST00000370481 GBP3-008 protein_coding Homo_sapiens 0 348
ENST00000370482 GBP3-009 retained_intron Homo_sapiens 0 348
ENST00000463660 GBP2-003 processed_transcript Homo_sapiens 0.0000004 62
ENST00000464839 GBP2-001 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000469194 GBP1-002 processed_transcript Homo_sapiens 0 215
ENST00000475853 GBP3-004 processed_transcript Homo_sapiens 0 228
ENST00000489444 GBP3-005 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000493594 GBP3-003 nonsense_mediated_decay Homo_sapiens 0 228
ENST00000564037 GBP3-011 retained_intron Homo_sapiens 0 228
ENST00000564665 GBP3-010 protein_coding Homo_sapiens 3e-31 139
ENST00000568006 GBP3-012 nonsense_mediated_decay Homo_sapiens 0 228

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