C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: endothelin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371025 EDN3-004 ENSG00000124205 9606 + 20:59300618-59324746 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LungMuscleENST00000371025
Transcript ID Lung Muscle
ENST00000371025 0.100±0.01 0.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093L CIL_00093L_0001 VISTA 20:59111478-59715059
CIL_00074T CIL_00074T_0001 CGP 20:59191020-59325992

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0019229 IEA regulation of vasoconstriction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029030 Edn3-001 protein_coding Mus_musculus 0 411
ENSMUST00000137369 Edn3-003 retained_intron Mus_musculus 0 268
ENSMUST00000140908 Edn3-002 protein_coding Mus_musculus 0 226
ENSMUST00000162473 Edn3-004 processed_transcript Mus_musculus 3e-19 100

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