C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: endothelin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140908 Edn3-002 ENSMUSG00000027524 10090 + 2:174760799-174781980 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartKidneyLiverPlacentaENSMUST00000140908
Transcript ID Adipose Heart Kidney Liver Placenta
ENSMUST00000140908 0.313±0.00 0.130±0.00 0.607±0.00 0.035±0.00 0.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093L CIL_00093L_0002 VISTA 2:174556549-175160580
CIL_00074T CIL_00074T_0002 CGP 2:174643534-174784042

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 IMP neural crest cell migration
GO:0005576 IEA extracellular region
GO:0006874 IGI cellular calcium ion homeostasis
GO:0008284 IDA positive regulation of cell proliferation
GO:0010961 IGI cellular magnesium ion homeostasis
GO:0019229 IEA regulation of vasoconstriction
GO:0030182 IMP neuron differentiation
GO:0030318 IDA melanocyte differentiation
GO:0030334 IMP regulation of cell migration
GO:0048070 IMP regulation of developmental pigmentation
GO:1901381 IGI positive regulation of potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311585 EDN3-002 protein_coding Homo_sapiens 0 226
ENST00000337938 EDN3-001 protein_coding Homo_sapiens 0 226
ENST00000371025 EDN3-004 protein_coding Homo_sapiens 0 226
ENST00000371028 EDN3-201 protein_coding Homo_sapiens 0 226
ENST00000395654 EDN3-003 protein_coding Homo_sapiens 0 226

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