C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00093L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm38 VISTA 9606 20:59111478-59715059
GeneTranscriptPositionBiotype
ENSG00000087495 (PHACTR3)
phosphatase and actin regulator 3 		ENST00000355648 (PHACTR3-007) 59676661-59847711 protein_coding
ENST00000359926 (PHACTR3-003) 59577509-59847711 protein_coding
ENST00000361300 (PHACTR3-006) 59721210-59847711 protein_coding
ENST00000371015 (PHACTR3-001) 59604548-59847711 protein_coding
ENST00000395636 (PHACTR3-002) 59721210-59847711 protein_coding
ENST00000434923 (PHACTR3-008) 59603505-59743113 protein_coding
ENST00000473657 (PHACTR3-005) 59843455-59847711 retained_intron
ENST00000492611 (PHACTR3-004) 59835853-59847711 retained_intron
ENST00000541461 (PHACTR3-201) 59628609-59847709 protein_coding
ENSG00000124203 (ZNF831)
zinc finger protein 831 		ENST00000371030 (ZNF831-001) 59191020-59259113 protein_coding
ENSG00000124205 (EDN3)
endothelin 3 		ENST00000311585 (EDN3-002) 59300443-59325992 protein_coding
ENST00000337938 (EDN3-001) 59300427-59325992 protein_coding
ENST00000371025 (EDN3-004) 59300618-59324746 protein_coding
ENST00000371028 (EDN3-201) 59300444-59325991 protein_coding
ENST00000395654 (EDN3-003) 59300703-59325992 protein_coding
ENSG00000225129 (RP4-614C15.2)
 ENST00000424662 (RP4-614C15.2-001) 59352195-59357774 lincRNA
ENSG00000227282 (RP11-164D18.2)
 ENST00000443747 (RP11-164D18.2-001) 59515191-59516039 lincRNA
ENSG00000232925 (MRPS16P2)
mitochondrial ribosomal protein S16 pseudogene 2 		ENST00000445106 (MRPS16P2-001) 59113224-59113631 processed_pseudogene
ENSG00000238194 (RP4-719C8.1)
 ENST00000443055 (RP4-719C8.1-002) 59626464-59628279 antisense
ENST00000451510 (RP4-719C8.1-001) 59626481-59628289 antisense
ENSG00000274961 (RP3-492J12.2)
 ENST00000610729 (RP3-492J12.2-001) 59123404-59147026 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00093L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm38 VISTA 10090 2:174556549-175160580
GeneTranscriptPositionBiotype
ENSMUSG00000027524 (Edn3)
endothelin 3 		ENSMUST00000029030 (Edn3-001) 174760619-174784042 protein_coding
ENSMUST00000137369 (Edn3-003) 174761052-174782585 retained_intron
ENSMUST00000140908 (Edn3-002) 174760799-174781980 protein_coding
ENSMUST00000162473 (Edn3-004) 174769922-174782540 processed_transcript
ENSMUSG00000050600 (Zfp831)
zinc finger protein 831 		ENSMUST00000059452 (Zfp831-001) 174643534-174710832 protein_coding
ENSMUSG00000078905 (Gm14393)
predicted gene 14393 		ENSMUST00000072895 (Gm14393-001) 175061549-175067763 protein_coding
ENSMUST00000109066 (Gm14393-002) 175063306-175067781 protein_coding
ENSMUSG00000078906 (Gm14444)
predicted gene 14444 		ENSMUST00000109069 (Gm14444-001) 175010241-175017612 protein_coding
ENSMUST00000109070 (Gm14444-002) 175010319-175019248 protein_coding
ENSMUSG00000080888 (Gm14387)
predicted gene 14387 		ENSMUST00000121827 (Gm14387-001) 175086501-175089918 unprocessed_pseudogene
ENSMUSG00000082112 (Gm14445)
predicted gene 14445 		ENSMUST00000117051 (Gm14445-001) 175038121-175041036 unprocessed_pseudogene
ENSMUSG00000084050 (Gm14439)
predicted gene 14439 		ENSMUST00000122320 (Gm14439-001) 175062436-175062876 processed_pseudogene
ENSMUSG00000084795 (Gm14617)
predicted gene 14617 		ENSMUST00000128053 (Gm14617-003) 174836091-174841174 lincRNA
ENSMUST00000144208 (Gm14617-002) 174838057-174841051 lincRNA
ENSMUST00000156804 (Gm14617-001) 174835964-174838634 retained_intron
ENSMUSG00000085608 (Gm16354)
predicted gene 16354 		ENSMUST00000155376 (Gm16354-001) 175023354-175023503 unprocessed_pseudogene
ENSMUSG00000086177 (Gm14616)
predicted gene 14616 		ENSMUST00000131690 (Gm14616-001) 174856289-174866531 lincRNA
ENSMUSG00000087215 (Gm14618)
predicted gene 14618 		ENSMUST00000149377 (Gm14618-001) 174842305-174853357 lincRNA
ENSMUSG00000087588 (Gm16355)
predicted gene 16355 		ENSMUST00000128606 (Gm16355-001) 175153998-175154228 processed_pseudogene
ENSMUSG00000090093 (Gm14399)
predicted gene 14399 		ENSMUST00000099029 (Gm14399-201) 175132925-175133322 protein_coding
ENSMUST00000108929 (Gm14399-202) 175130128-175131864 protein_coding
ENSMUST00000109059 (Gm14399-002) 175132482-175141999 protein_coding
ENSMUST00000109060 (Gm14399-001) 175130128-175142012 protein_coding
ENSMUST00000109062 (Gm14399-003) 175129493-175141999 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00093L_0001ENSG00000087495ENST00000355648ENST00000359926ENST00000361300ENST00000371015ENST00000395636ENST00000434923ENST00000473657ENST00000492611ENST00000541461ENSG00000124203ENST00000371030ENSG00000124205ENST00000311585ENST00000337938ENST00000371025ENST00000371028ENST00000395654ENSG00000225129ENST00000424662ENSG00000227282ENST00000443747ENSG00000232925ENST00000445106ENSG00000238194ENST00000443055ENST00000451510ENSG00000274961ENST00000610729CIL_00093L_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00093L_0001ENSG00000087495ENST00000355648ENST00000359926ENST00000361300ENST00000371015ENST00000473657ENST00000492611ENSG00000124203ENST00000371030ENSG00000124205ENST00000311585ENST00000337938ENST00000371025ENST00000371028ENST00000395654ENSG00000225129ENST00000424662ENSG00000227282ENST00000443747ENSG00000232925ENST00000445106ENSG00000238194ENST00000443055ENST00000451510ENSG00000274961ENST00000610729CIL_00093L_0002ENSMUSG00000027524ENSMUST00000029030ENSMUST00000137369ENSMUST00000140908ENSMUST00000162473ENSMUSG00000050600ENSMUST00000059452ENSMUSG00000078905ENSMUST00000072895ENSMUST00000109066ENSMUSG00000078906ENSMUST00000109069ENSMUST00000109070ENSMUSG00000080888ENSMUST00000121827ENSMUSG00000082112ENSMUST00000117051ENSMUSG00000084050ENSMUST00000122320ENSMUSG00000084795ENSMUST00000128053ENSMUST00000144208ENSMUST00000156804ENSMUSG00000085608ENSMUST00000155376ENSMUSG00000086177ENSMUST00000131690ENSMUSG00000087215ENSMUST00000149377ENSMUSG00000087588ENSMUST00000128606ENSMUSG00000090093ENSMUST00000099029ENSMUST00000108929ENSMUST00000109059ENSMUST00000109060ENSMUST00000109062
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087495 ENST00000355648 N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.00 0.241±0.00 N/A N/A N/A N/A
ENST00000359926 0.040±0.00 N/A N/A 2.476±0.00 0.549±0.00 0.613±0.00 N/A N/A 0.063±0.03 3.003±0.00 N/A 4.756±4.86 0.240±0.00 0.557±0.31
ENST00000361300 N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A 0.016±0.00 3.762±0.00 0.169±0.00 N/A
ENST00000371015 N/A N/A N/A 6.483±3.90 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A
ENST00000395636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473657 0.025±0.00 0.013±0.00 0.076±0.00 N/A 0.109±0.00 N/A N/A N/A 0.014±0.00 0.116±0.00 0.045±0.00 0.396±0.07 N/A 0.065±0.00
ENST00000492611 N/A N/A N/A N/A 0.112±0.00 0.294±0.18 2.088±2.03 1.014±0.00 N/A 0.331±0.00 N/A 1.491±1.27 0.377±0.00 0.120±0.00
ENST00000541461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000124203 ENST00000371030 0.048±0.00 0.606±0.00 0.006±0.00 0.335±0.08 0.135±0.07 0.023±0.00 0.026±0.01 0.076±0.03 0.108±0.06 0.228±0.14 0.004±0.00 0.054±0.02 0.021±0.01 0.103±0.04
ENSG00000124205 ENST00000311585 N/A N/A N/A N/A 0.371±0.00 1.593±0.00 N/A N/A N/A N/A N/A 0.282±0.19 N/A 0.339±0.00
ENST00000337938 N/A N/A N/A 0.755±0.00 0.502±0.15 N/A N/A N/A N/A 0.035±0.00 N/A 0.171±0.00 0.159±0.00 N/A
ENST00000371025 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.01 0.322±0.00 N/A N/A N/A
ENST00000371028 N/A N/A N/A 0.401±0.00 0.089±0.00 2.357±0.00 0.013±0.00 N/A N/A N/A 0.513±0.00 0.125±0.00 0.439±0.46 0.506±0.20
ENST00000395654 N/A 0.058±0.00 N/A 0.255±0.04 N/A 0.390±0.00 N/A 0.269±0.00 N/A N/A N/A N/A N/A 0.261±0.00
ENSG00000225129 ENST00000424662 N/A 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00
ENSG00000227282 ENST00000443747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.473±0.00
ENSG00000232925 ENST00000445106 N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000238194 ENST00000443055 N/A N/A N/A N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A N/A N/A 0.035±0.00
ENST00000451510 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A 0.036±0.00
ENSG00000274961 ENST00000610729 N/A 0.682±0.00 N/A N/A 0.057±0.00 0.208±0.17 N/A N/A 0.300±0.00 0.493±0.44 N/A 0.044±0.00 N/A 0.214±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027524 ENSMUST00000029030 0.579±0.05 4.091±0.31 1.750±0.23 0.926±0.38 0.063±0.02 1.559±0.33 0.088±0.06 1.428±0.16 0.089±0.05 4.973±0.09 0.332±0.08 1.604±0.62 0.277±0.15 0.185±0.15
ENSMUST00000137369 N/A N/A N/A N/A 0.018±0.00 0.769±0.21 N/A 0.530±0.09 0.011±0.00 1.112±0.00 0.207±0.00 0.862±0.29 0.129±0.03 0.024±0.01
ENSMUST00000140908 0.313±0.00 N/A N/A N/A N/A N/A 0.130±0.00 0.607±0.00 0.035±0.00 N/A N/A N/A 0.170±0.00 N/A
ENSMUST00000162473 0.023±0.00 N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A N/A 0.086±0.00 N/A 0.041±0.00 0.023±0.00
ENSMUSG00000050600 ENSMUST00000059452 0.083±0.05 0.023±0.01 0.024±0.01 0.862±1.21 1.338±0.76 0.097±0.04 0.030±0.01 0.086±0.07 0.035±0.02 0.343±0.03 0.070±0.09 0.038±0.03 0.009±0.01 0.053±0.02
ENSMUSG00000078905 ENSMUST00000072895 N/A N/A N/A 0.118±0.05 N/A N/A 0.080±0.00 0.089±0.00 0.022±0.00 N/A 0.105±0.06 0.314±0.10 0.099±0.02 N/A
ENSMUST00000109066 0.114±0.01 0.572±0.00 0.530±0.00 0.139±0.11 N/A N/A 0.093±0.01 N/A 0.050±0.03 N/A 0.173±0.09 0.440±0.20 0.229±0.12 0.232±0.00
ENSMUSG00000078906 ENSMUST00000109069 0.176±0.05 N/A 0.060±0.04 0.048±0.02 0.210±0.04 N/A N/A 0.070±0.01 0.015±0.01 0.153±0.00 0.051±0.03 0.122±0.04 0.312±0.13 N/A
ENSMUST00000109070 0.065±0.00 N/A 0.016±0.01 0.125±0.11 N/A N/A N/A 0.041±0.00 0.201±0.00 N/A 0.013±0.00 N/A 0.066±0.04 0.039±0.00
ENSMUSG00000080888 ENSMUST00000121827 0.058±0.01 N/A 0.274±0.01 0.332±0.19 0.406±0.00 0.161±0.05 0.153±0.03 0.046±0.03 0.110±0.07 0.073±0.01 0.093±0.03 0.296±0.14 0.179±0.12 0.044±0.03
ENSMUSG00000082112 ENSMUST00000117051 N/A N/A 0.014±0.00 0.008±0.00 N/A 0.155±0.00 0.039±0.01 0.057±0.02 0.008±0.00 N/A 0.023±0.00 0.012±0.00 0.003±0.00 N/A
ENSMUSG00000084050 ENSMUST00000122320 2.051±0.70 2.405±0.54 0.668±0.27 0.554±0.36 2.015±0.91 0.677±0.56 0.176±0.12 1.046±0.33 0.279±0.24 0.954±0.27 0.192±0.05 0.825±0.42 0.322±0.16 0.218±0.07
ENSMUSG00000084795 ENSMUST00000128053 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A 0.561±0.27
ENSMUST00000144208 0.060±0.00 N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A 0.053±0.02 0.182±0.11
ENSMUST00000156804 N/A 0.238±0.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.00
ENSMUSG00000085608 ENSMUST00000155376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 441.605±0.00
ENSMUSG00000086177 ENSMUST00000131690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.447±0.29 N/A
ENSMUSG00000087215 ENSMUST00000149377 N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A 0.078±0.00 N/A 0.114±0.00 0.016±0.00 0.121±0.04
ENSMUSG00000087588 ENSMUST00000128606 N/A N/A N/A 0.185±0.00 N/A N/A 0.694±0.00 N/A N/A N/A 0.473±0.17 0.705±0.00 1.269±0.04 N/A
ENSMUSG00000090093 ENSMUST00000099029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.014±0.00
ENSMUST00000108929 N/A N/A 0.681±0.00 1.280±1.03 N/A 0.242±0.00 N/A 0.169±0.00 0.264±0.00 N/A 0.413±0.14 3.792±2.15 0.867±0.28 N/A
ENSMUST00000109059 0.523±0.12 0.431±0.00 1.307±0.00 N/A 0.212±0.06 N/A 0.385±0.00 0.191±0.00 0.481±0.00 0.245±0.02 0.373±0.09 0.385±0.11 0.679±0.00 0.104±0.02
ENSMUST00000109060 0.658±0.15 0.214±0.07 1.358±0.10 2.499±1.33 0.403±0.19 0.314±0.20 0.426±0.09 0.273±0.14 0.406±0.41 0.461±0.22 0.162±0.05 1.056±1.34 0.838±0.49 0.046±0.02
ENSMUST00000109062 0.392±0.07 N/A 1.612±0.04 0.528±0.14 0.431±0.13 0.309±0.00 0.519±0.20 0.474±0.29 0.464±0.36 0.386±0.17 0.886±0.38 1.062±0.70 0.508±0.05 0.145±0.04

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