C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysosomal-associated membrane protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371335 LAMP2-002 ENSG00000005893 9606 - X:120436494-120469306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371335 18.293±0.00 11.917±0.00 2.949±0.00 43.611±33.58 13.147±6.14 8.894±4.72 5.853±3.44 11.937±6.98 8.129±3.07 12.373±4.31 19.152±13.89 13.216±1.88 8.491±0.99 9.160±5.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016Y CIL_00016Y_0002 CGP X:120362085-120469365
CIL_00016X CIL_00016X_0002 CGP X:120427827-120575794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005764 IDA lysosome
GO:0005765 IDA lysosomal membrane
GO:0005770 IDA late endosome
GO:0005886 TAS plasma membrane
GO:0007596 TAS blood coagulation
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019899 IPI enzyme binding
GO:0030168 TAS platelet activation
GO:0031088 IDA platelet dense granule membrane
GO:0031902 IDA late endosome membrane
GO:0050821 ISS protein stabilization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061755 Lamp2-002 protein_coding Mus_musculus 0 874
ENSMUST00000016678 Lamp2-001 protein_coding Mus_musculus 0 568
ENSMUST00000074913 Lamp2-003 protein_coding Mus_musculus 0 562
ENSMUST00000136817 Lamp2-004 retained_intron Mus_musculus 0 327

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