C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: surfeit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371989 SURF4-001 ENSG00000148248 9606 - 9:133361449-133376099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371989
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371989 86.128±0.00 43.247±0.00 8.090±0.00 17.304±6.22 62.046±49.60 31.204±14.34 15.922±11.39 54.578±22.83 79.846±65.51 38.679±27.02 21.253±12.28 60.350±25.86 103.973±11.02 42.927±14.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DE CIL_0006DE_0001 CGP 9:133356552-133376166
CIL_0006DD CIL_0006DD_0001 CGP 9:133361449-133406096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0007030 IMP Golgi organization
GO:0010638 IMP positive regulation of organelle organization
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015011 Surf4-001 protein_coding Mus_musculus 0 1218
ENSMUST00000153641 Surf4-003 nonsense_mediated_decay Mus_musculus 0 566
ENSMUST00000015017 Surf2-001 protein_coding Mus_musculus 5e-40 171
ENSMUST00000126947 Surf2-002 processed_transcript Mus_musculus 7e-39 167
ENSMUST00000135506 Surf2-006 retained_intron Mus_musculus 9e-38 163

Loading