C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rap guanine nucleotide exchange factor (GEF) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372195 RAPGEF1-002 ENSG00000107263 9606 - 9:131576770-131740074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaENST00000372195
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta
ENST00000372195 14.084±0.00 19.321±0.00 5.266±0.00 14.636±0.00 4.253±3.52 3.855±3.30 10.775±0.00 5.607±0.00 5.132±3.40 11.285±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0001 VISTA 9:131030990-131632063
CIL_0002EB CIL_0002EB_0002 CGP 9:131576770-132079908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005622 IEA intracellular
GO:0007264 IEA small GTPase mediated signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102872 Rapgef1-001 protein_coding Mus_musculus 0 3908
ENSMUST00000095087 Rapgef1-007 protein_coding Mus_musculus 0 2302
ENSMUST00000147755 Rapgef1-003 nonsense_mediated_decay Mus_musculus 0 1653
ENSMUST00000091146 Rapgef1-004 protein_coding Mus_musculus 0 1652
ENSMUST00000147488 Rapgef1-002 protein_coding Mus_musculus 0 1611
ENSMUST00000137719 Rapgef1-005 processed_transcript Mus_musculus 0 501

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