C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372307 SLC6A9-008 ENSG00000196517 9606 - 1:43991500-44016556 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENST00000372307
Transcript ID Placenta Testis
ENST00000372307 1.974±0.00 2.763±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B8 CIL_0009B8_0001 VISTA 1:43734711-44337665
CIL_0008SF CIL_0008SF_0001 VISTA 1:43949748-44550457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005283 IEA sodium:amino acid symporter activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030269 Slc6a9-001 protein_coding Mus_musculus 0 2034
ENSMUST00000063857 Slc6a9-003 protein_coding Mus_musculus 0 2034
ENSMUST00000163288 Slc6a9-010 protein_coding Mus_musculus 0 1760
ENSMUST00000169885 Slc6a9-009 protein_coding Mus_musculus 0 1555
ENSMUST00000169990 Slc6a9-013 protein_coding Mus_musculus 0 1310
ENSMUST00000132043 Slc6a9-006 protein_coding Mus_musculus 0 1310
ENSMUST00000149168 Slc6a9-002 nonsense_mediated_decay Mus_musculus 0 1303
ENSMUST00000123994 Slc6a9-011 protein_coding Mus_musculus 0 510
ENSMUST00000136476 Slc6a9-008 processed_transcript Mus_musculus 0 486
ENSMUST00000135769 Slc6a9-007 processed_transcript Mus_musculus 0 268

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