C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372358 EXOSC2-001 ENSG00000130713 9606 + 9:130693721-130704861 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372358
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372358 2.563±0.00 0.560±0.00 3.560±0.25 1.731±0.40 1.866±0.00 0.806±0.35 2.250±0.00 3.288±0.87 1.636±0.33 4.130±0.00 4.975±1.85 5.997±1.24 2.370±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000936 CIL_000936_0001 VISTA 9:130178260-130779710
CIL_0008XQ CIL_0008XQ_0001 VISTA 9:130365168-130965841
CIL_0006IB CIL_0006IB_0001 CGP 9:130664594-130704894
CIL_0007CW CIL_0007CW_0002 CGP 9:130693721-130887675

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000175 TAS 3'-5'-exoribonuclease activity
GO:0000178 IDA exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006364 IEA rRNA processing
GO:0008312 TAS 7S RNA binding
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030307 IMP positive regulation of cell growth
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0090503 TAS RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038474 Exosc2-001 protein_coding Mus_musculus 0 1053
ENSMUST00000149094 Exosc2-002 processed_transcript Mus_musculus 0 518
ENSMUST00000125883 Exosc2-003 processed_transcript Mus_musculus 0 505
ENSMUST00000146135 Exosc2-004 processed_transcript Mus_musculus 0 329

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