C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007CW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000028688-ENSDARG00000035187 CGP 7955 5:75251684-75283136
GeneTranscriptPositionBiotype
ENSDARG00000028688 (exosc2)
exosome component 2 		ENSDART00000149195 (exosc2-001) 75251684-75257645 protein_coding
ENSDART00000150216 (exosc2-002) 75251758-75256000 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0007CW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130713-ENSG00000097007 CGP 9606 9:130693721-130887675
GeneTranscriptPositionBiotype
ENSG00000097007 (ABL1)
ABL proto-oncogene 1, non-receptor tyrosine kinase 		ENST00000318560 (ABL1-001) 130835066-130887675 protein_coding
ENST00000372348 (ABL1-002) 130713946-130885683 protein_coding
ENST00000393293 (ABL1-003) 130713980-130854122 protein_coding
ENSG00000130713 (EXOSC2)
exosome component 2 		ENST00000372350 (EXOSC2-005) 130693787-130702293 protein_coding
ENST00000372351 (EXOSC2-002) 130693786-130704861 protein_coding
ENST00000372352 (EXOSC2-006) 130693780-130704861 protein_coding
ENST00000372358 (EXOSC2-001) 130693721-130704861 protein_coding
ENST00000430138 (EXOSC2-007) 130693775-130704861 processed_transcript
ENST00000463488 (EXOSC2-010) 130693806-130699681 processed_transcript
ENST00000467138 (EXOSC2-008) 130700842-130704861 processed_transcript
ENST00000490641 (EXOSC2-009) 130693780-130699791 processed_transcript
ENST00000491115 (EXOSC2-004) 130693721-130703774 processed_transcript
ENST00000495699 (EXOSC2-003) 130693806-130703181 protein_coding
ENST00000546165 (EXOSC2-201) 130693760-130704894 protein_coding
ENSG00000224797 (RP11-57C19.6)
 ENST00000417156 (RP11-57C19.6-001) 130724786-130725050 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0007CW_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039356-ENSMUSG00000026842 CGP 10090 2:31670715-31804227
GeneTranscriptPositionBiotype
ENSMUSG00000026842 (Abl1)
c-abl oncogene 1, non-receptor tyrosine kinase 		ENSMUST00000028190 (Abl1-008) 31759943-31804227 protein_coding
ENSMUST00000075759 (Abl1-001) 31689295-31803541 protein_coding
ENSMUST00000123471 (Abl1-004) 31689465-31778392 processed_transcript
ENSMUST00000124089 (Abl1-009) 31760173-31779024 protein_coding
ENSMUST00000124726 (Abl1-011) 31796646-31797992 processed_transcript
ENSMUST00000127714 (Abl1-010) 31790171-31794570 processed_transcript
ENSMUST00000135233 (Abl1-005) 31689611-31779024 processed_transcript
ENSMUST00000137049 (Abl1-006) 31689611-31779024 processed_transcript
ENSMUST00000142554 (Abl1-007) 31688552-31800339 processed_transcript
ENSMUST00000146537 (Abl1-002) 31688376-31698336 processed_transcript
ENSMUST00000156736 (Abl1-003) 31688537-31707082 processed_transcript
ENSMUSG00000039356 (Exosc2)
exosome component 2 		ENSMUST00000038474 (Exosc2-001) 31670715-31681350 protein_coding
ENSMUST00000125883 (Exosc2-003) 31670743-31678460 processed_transcript
ENSMUST00000137156 (Exosc2-005) 31670734-31680519 protein_coding
ENSMUST00000146135 (Exosc2-004) 31673256-31678533 processed_transcript
ENSMUST00000149094 (Exosc2-002) 31670723-31676102 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007CW_0001ENSDARG00000028688ENSDART00000149195ENSDART00000150216CIL_0007CW_0002ENSG00000097007ENST00000318560ENST00000372348ENST00000393293ENSG00000130713ENST00000372350ENST00000372351ENST00000372352ENST00000372358ENST00000430138ENST00000463488ENST00000467138ENST00000490641ENST00000491115ENST00000495699ENST00000546165ENSG00000224797ENST00000417156CIL_0007CW_0003ENSMUSG00000026842ENSMUST00000028190ENSMUST00000075759ENSMUST00000123471ENSMUST00000124089ENSMUST00000124726ENSMUST00000127714ENSMUST00000135233ENSMUST00000137049ENSMUST00000142554ENSMUST00000146537ENSMUST00000156736ENSMUSG00000039356ENSMUST00000038474ENSMUST00000125883ENSMUST00000137156ENSMUST00000146135ENSMUST00000149094
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007CW_0001ENSDARG00000028688ENSDART00000149195ENSDART00000150216CIL_0007CW_0002ENSG00000097007ENST00000318560ENST00000372348ENSG00000130713ENST00000372350ENST00000372351ENST00000372352ENST00000372358ENST00000430138ENST00000467138ENST00000495699ENST00000546165ENSG00000224797ENST00000417156CIL_0007CW_0003ENSMUSG00000026842ENSMUST00000028190ENSMUST00000075759ENSMUST00000142554ENSMUSG00000039356ENSMUST00000038474
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000028688 ENSDART00000149195 N/A N/A N/A 2.549±1.01 N/A N/A 6.043±0.06 3.566±0.00 3.940±0.00 N/A 4.742±0.00 N/A N/A N/A
ENSDART00000150216 N/A N/A N/A 0.356±0.23 N/A N/A 2.091±0.18 0.885±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000097007 ENST00000318560 28.805±0.00 5.086±0.00 N/A 5.520±5.22 5.820±4.48 22.961±21.14 3.915±3.56 9.567±0.00 4.792±1.86 29.911±0.00 4.254±2.50 14.808±17.42 11.652±1.74 9.289±7.88
ENST00000372348 N/A N/A 1.004±0.00 N/A 2.813±0.00 2.202±0.00 0.876±0.00 N/A 3.065±0.00 1.102±0.00 N/A 2.014±0.00 N/A N/A
ENST00000393293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000130713 ENST00000372350 N/A N/A N/A N/A N/A N/A 0.565±0.00 N/A N/A N/A 1.910±0.00 N/A N/A N/A
ENST00000372351 N/A 2.707±0.00 0.500±0.00 N/A N/A 0.428±0.00 N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A
ENST00000372352 N/A N/A N/A N/A N/A 1.889±0.00 N/A N/A N/A 0.614±0.00 N/A N/A N/A N/A
ENST00000372358 2.563±0.00 N/A 0.560±0.00 3.560±0.25 1.731±0.40 1.866±0.00 0.806±0.35 2.250±0.00 3.288±0.87 1.636±0.33 4.130±0.00 4.975±1.85 5.997±1.24 2.370±0.94
ENST00000430138 0.626±0.00 4.038±0.00 N/A 1.409±0.00 0.947±0.01 0.603±0.00 N/A N/A N/A N/A 0.727±0.00 2.215±0.35 N/A 1.591±0.00
ENST00000463488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467138 N/A 2.120±0.00 0.578±0.00 N/A 0.688±0.00 0.631±0.03 0.521±0.00 N/A 0.425±0.00 0.651±0.07 N/A 1.999±0.14 N/A 0.793±0.00
ENST00000490641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495699 3.089±0.00 N/A N/A N/A 3.979±0.00 N/A 0.898±0.47 3.215±0.00 2.137±0.00 2.603±0.00 6.045±0.00 5.013±0.00 6.503±0.00 N/A
ENST00000546165 N/A N/A N/A N/A 0.858±0.00 N/A N/A N/A N/A 0.726±0.20 N/A N/A N/A N/A
ENSG00000224797 ENST00000417156 0.085±0.00 0.090±0.00 N/A N/A 0.190±0.00 0.176±0.00 0.528±0.00 0.285±0.00 0.518±0.00 1.233±0.00 1.747±0.00 1.049±0.00 N/A 0.335±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026842 ENSMUST00000028190 5.614±1.40 N/A 12.012±0.94 3.546±0.04 3.857±0.53 4.662±0.65 3.092±0.99 2.898±0.54 1.833±0.67 4.434±0.36 4.590±0.43 6.586±1.01 3.464±1.38 5.764±0.89
ENSMUST00000075759 20.136±5.30 29.778±3.43 18.495±0.82 14.772±5.37 18.146±5.06 28.045±3.41 7.330±0.99 11.498±1.26 5.865±1.70 19.791±0.26 4.635±0.64 31.608±9.85 10.076±5.58 11.634±4.49
ENSMUST00000123471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.297±0.60 7.996±0.00 5.754±1.17
ENSMUST00000146537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039356 ENSMUST00000038474 N/A N/A N/A 12.929±2.42 N/A N/A N/A N/A 23.092±9.46 N/A 5.173±0.68 15.184±0.90 15.343±6.79 4.074±0.00
ENSMUST00000125883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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