C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argonaute RISC catalytic component 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373191 AGO3-003 ENSG00000126070 9606 + 1:35931078-36072500 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000373191
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000373191 0.978±0.00 1.480±0.00 1.473±0.00 0.587±0.00 0.514±0.12 0.239±0.00 1.105±0.00 0.981±0.00 0.293±0.00 0.851±0.26 0.655±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0006402 IDA mRNA catabolic process
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016442 IEA RISC complex
GO:0035068 IEA micro-ribonucleoprotein complex
GO:0035198 IEA miRNA binding
GO:0035278 IDA negative regulation of translation involved in gene silencing by miRNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0072091 IMP regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069097 Ago3-001 protein_coding Mus_musculus 0 4058
ENSMUST00000127800 Ago1-002 nonsense_mediated_decay Mus_musculus 0 1194
ENSMUST00000097888 Ago1-001 protein_coding Mus_musculus 0 1194
ENSMUST00000176315 Ago1-005 protein_coding Mus_musculus 0 941
ENSMUST00000132123 Ago3-002 protein_coding Mus_musculus 0 636
ENSMUST00000151179 Ago3-004 processed_transcript Mus_musculus 0 545
ENSMUST00000123233 Ago3-006 processed_transcript Mus_musculus 0 501
ENSMUST00000127831 Ago3-003 protein_coding Mus_musculus 0 383
ENSMUST00000155645 Ago3-005 processed_transcript Mus_musculus 0 379
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.0001 57
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.0001 57
ENSMUST00000105140 AW011738-201 protein_coding Mus_musculus 0.001 53

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