C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: POU class 3 homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373200 POU3F4-001 ENSG00000196767 9606 + X:83508250-83509767 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyTestisENST00000373200
Transcript ID Bladder Brain Colon Heart Kidney Testis
ENST00000373200 0.189±0.00 0.203±0.04 0.234±0.08 0.014±0.00 1.672±0.00 0.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L1 CIL_0007L1_0002 UCNEbase X:82740842-83511960
CIL_00087R CIL_00087R_0001 VISTA X:83210966-83812813
CIL_0000KR CIL_0000KR_0001 CGP X:83508250-83886699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003680 IEA AT DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007605 IEA sensory perception of sound
GO:0021879 IEA forebrain neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048839 IEA inner ear development
GO:0090103 ISS cochlea morphogenesis
GO:2001054 ISS negative regulation of mesenchymal cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078229 Pou3f4-001 protein_coding Mus_musculus 0 1700
ENSMUST00000053491 Pou3f1-001 protein_coding Mus_musculus 0 425
ENSMUST00000054883 Pou3f3-001 protein_coding Mus_musculus 0 409
ENSMUST00000178174 Pou3f2-001 protein_coding Mus_musculus 0 409
ENSDART00000110243 pou3f2a-201 protein_coding Danio_rerio 0 387

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