C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argonaute RISC catalytic component 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373204 AGO1-002 ENSG00000092847 9606 + 1:35883209-35929610 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373204 4.713±0.00 2.566±0.00 0.641±0.00 2.083±0.40 1.099±0.82 1.750±1.15 1.118±0.62 1.675±0.92 1.886±0.81 0.737±0.12 0.829±0.12 2.504±1.69 0.862±0.00 2.398±0.62

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IEA cytoplasmic mRNA processing body
GO:0000956 IDA nuclear-transcribed mRNA catabolic process
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005844 IDA polysome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0010586 IEA miRNA metabolic process
GO:0010628 IEA positive regulation of gene expression
GO:0030529 IDA ribonucleoprotein complex
GO:0031047 IEA gene silencing by RNA
GO:0035068 IDA micro-ribonucleoprotein complex
GO:0035198 IEA miRNA binding
GO:0035278 IDA negative regulation of translation involved in gene silencing by miRNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097888 Ago1-001 protein_coding Mus_musculus 0 6167
ENSMUST00000127800 Ago1-002 nonsense_mediated_decay Mus_musculus 0 4228
ENSMUST00000176315 Ago1-005 protein_coding Mus_musculus 0 2396
ENSDART00000156255 AGO1-001 protein_coding Danio_rerio 0 1997
ENSDART00000138318 AGO1-201 protein_coding Danio_rerio 0 1929
ENSDART00000091813 ago3b-001 protein_coding Danio_rerio 0 1448
ENSMUST00000069097 Ago3-001 protein_coding Mus_musculus 0 1243
ENSMUST00000156533 Ago1-004 retained_intron Mus_musculus 0 399
ENSMUST00000149425 Ago1-003 retained_intron Mus_musculus 0 300

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