C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: torsin family 2, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373284 TOR2A-006 ENSG00000160404 9606 - 9:127731524-127735317 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000373284
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000373284 3.129±0.00 3.906±0.00 1.133±0.00 3.501±0.00 0.750±0.34 1.648±0.00 5.798±0.00 4.310±0.00 8.915±5.07 12.098±5.14 10.188±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0001 VISTA 9:127227593-127829012
CIL_00075N CIL_00075N_0001 CGP 9:127716066-127735317
CIL_0002CG CIL_0002CG_0002 CGP 9:127731524-127778741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005783 IEA endoplasmic reticulum
GO:0005788 IDA endoplasmic reticulum lumen
GO:0051085 IEA chaperone mediated protein folding requiring cofactor
GO:0051260 IDA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009707 Tor2a-001 protein_coding Mus_musculus 0 1037
ENSMUST00000149720 Tor2a-007 retained_intron Mus_musculus 0 832
ENSMUST00000156617 Tor2a-002 nonsense_mediated_decay Mus_musculus 0 715
ENSMUST00000140999 Tor2a-003 protein_coding Mus_musculus 0 656
ENSMUST00000175763 Tor2a-009 nonsense_mediated_decay Mus_musculus 0 573
ENSMUST00000149987 Tor2a-006 retained_intron Mus_musculus 0 361

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