C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 1, regulatory subunit 16B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373331 PPP1R16B-004 ENSG00000101445 9606 + 20:38805724-38923024 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverMuscleOvaryPlacentaENST00000373331
Transcript ID Breast Heart Kidney Liver Muscle Ovary Placenta
ENST00000373331 1.173±0.00 0.749±0.00 0.814±0.36 0.229±0.10 0.056±0.03 0.236±0.00 0.722±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081Y CIL_00081Y_0001 VISTA 20:38219747-38821106
CIL_0004EB CIL_0004EB_0001 CGP 20:38748442-38923024
CIL_0003RW CIL_0003RW_0001 CGP 20:38805705-38953106

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005886 NAS plasma membrane
GO:0007165 NAS signal transduction
GO:0019903 NAS protein phosphatase binding
GO:0051489 ISS regulation of filopodium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000145073 Ppp1r16b-004 protein_coding Mus_musculus 0 1893
ENSMUST00000103116 Ppp1r16b-201 protein_coding Mus_musculus 0 1219
ENSMUST00000045503 Ppp1r16b-002 protein_coding Mus_musculus 0 1219
ENSMUST00000052927 Ppp1r16b-001 protein_coding Mus_musculus 0 1219
ENSMUST00000129902 Ppp1r16b-003 retained_intron Mus_musculus 0 974

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