C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373620 DENND1A-004 ENSG00000119522 9606 - 9:123400099-123930126 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonENST00000373620
Transcript ID Breast Colon
ENST00000373620 0.586±0.00 0.777±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WP CIL_0006WP_0001 CGP 9:123356170-123930152
CIL_0006WO CIL_0006WO_0001 CGP 9:123379654-124033301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0006897 IMP endocytosis
GO:0015031 IEA protein transport
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0030054 IEA cell junction
GO:0030136 IDA clathrin-coated vesicle
GO:0032483 IDA regulation of Rab protein signal transduction
GO:0032851 IDA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102787 Dennd1a-001 protein_coding Mus_musculus 0 2327
ENSMUST00000140552 Dennd1a-002 nonsense_mediated_decay Mus_musculus 0 1877
ENSMUST00000126889 Dennd1a-009 retained_intron Mus_musculus 0 821
ENSMUST00000150896 Dennd1a-003 nonsense_mediated_decay Mus_musculus 0 754
ENSMUST00000143095 Dennd1a-004 nonsense_mediated_decay Mus_musculus 0 446
ENSMUST00000130472 Dennd1a-007 protein_coding Mus_musculus 0 272
ENSMUST00000136460 Dennd1a-010 protein_coding Mus_musculus 0 243
ENSMUST00000142813 Dennd1a-005 nonsense_mediated_decay Mus_musculus 0 243
ENSMUST00000136116 Dennd1a-008 retained_intron Mus_musculus 2e-39 169

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