C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glial fibrillary acidic protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000028270 gfap-001 ENSDARG00000025301 7955 - 3:31929417-31941457 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000028270
Transcript ID Brain Heart Kidney Muscle
ENSDART00000028270 22.085±8.77 0.184±0.12 0.143±0.05 0.528±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023718 5430421N21Rik-001 protein_coding Mus_musculus 0.0000000003 71
ENSMUST00000023786 Krt6b-201 protein_coding Mus_musculus 7e-23 113
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 7e-23 113
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0.00000000002 75
ENSMUST00000028062 Vim-001 protein_coding Mus_musculus 8.00001e-42 176
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 1e-16 94
ENSMUST00000061185 Krt81-201 protein_coding Mus_musculus 0.00000000003 75
ENSMUST00000081945 Krt83-201 protein_coding Mus_musculus 0.00000000003 75
ENSMUST00000088049 Krt86-201 protein_coding Mus_musculus 0.0000000004 71
ENSMUST00000100179 Krt76-001 protein_coding Mus_musculus 0.00000002 66
ENSMUST00000148248 Vim-004 retained_intron Mus_musculus 3e-40 169
ENST00000253408 GFAP-001 protein_coding Homo_sapiens 0 429
ENST00000257901 KRT85-001 protein_coding Homo_sapiens 0.0000000004 71
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 0.0000007 60
ENST00000293525 KRT86-201 protein_coding Homo_sapiens 0.00000002 66
ENST00000293670 KRT83-001 protein_coding Homo_sapiens 0.0000000003 71
ENST00000327741 KRT81-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000373960 DES-001 protein_coding Homo_sapiens 0 191
ENST00000399259 KRT8P6-001 processed_pseudogene Homo_sapiens 0.0000005 60
ENST00000423953 KRT8P20-001 processed_pseudogene Homo_sapiens 0.00003 55
ENST00000423955 KRT86-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000425226 KRT8P15-001 processed_pseudogene Homo_sapiens 0.00003 55
ENST00000434750 KRT8P8-001 processed_pseudogene Homo_sapiens 0.0000006 60
ENST00000435360 GFAP-002 protein_coding Homo_sapiens 0 398
ENST00000438938 KRT8P51-001 processed_pseudogene Homo_sapiens 0.0000001 60
ENST00000441370 KRT8P38-001 processed_pseudogene Homo_sapiens 0.00003 55
ENST00000453110 KRT8P17-001 processed_pseudogene Homo_sapiens 0.00003 55
ENST00000489121 KRT8P36-001 processed_pseudogene Homo_sapiens 0.00003 55
ENST00000504812 KRT8P31-001 processed_pseudogene Homo_sapiens 0.00003 55
ENST00000508125 KRT8P33-001 processed_pseudogene Homo_sapiens 0.0000005 60
ENST00000512863 KRT8P32-001 processed_pseudogene Homo_sapiens 0.00003 55
ENST00000515599 KRT8P48-001 processed_pseudogene Homo_sapiens 0.0000000008 69
ENST00000519669 KRT8P3-001 processed_pseudogene Homo_sapiens 0.000002 58
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 0.000001 60
ENST00000546826 KRT8-013 protein_coding Homo_sapiens 0.0000004 60
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 0.0000007 60
ENST00000546900 KRT8-017 protein_coding Homo_sapiens 0.00003 53
ENST00000547413 KRT8-016 protein_coding Homo_sapiens 0.0000003 60
ENST00000548998 KRT8-014 protein_coding Homo_sapiens 0.0000004 60
ENST00000549176 KRT8-018 retained_intron Homo_sapiens 0.000004 57
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 0.0000009 60
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 0.0000007 60
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 0.0000008 60
ENST00000553310 KRT86-002 protein_coding Homo_sapiens 0.000000005 66
ENST00000557533 KRT8P1-001 processed_pseudogene Homo_sapiens 0.00000001 66
ENST00000558927 KRT8P9-001 processed_pseudogene Homo_sapiens 0.00003 55
ENST00000560090 KRT8P23-001 processed_pseudogene Homo_sapiens 0.0000005 60
ENST00000585543 GFAP-014 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000586793 GFAP-024 protein_coding Homo_sapiens 0 398
ENST00000587997 GFAP-011 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000588640 GFAP-012 processed_transcript Homo_sapiens 0 191
ENST00000592320 GFAP-005 protein_coding Homo_sapiens 2e-28 130
ENST00000592443 KRT8P5-001 processed_pseudogene Homo_sapiens 0.0000006 60
ENST00000615839 KRT81-201 protein_coding Homo_sapiens 0.00000001 66
ENST00000620027 KRT123P-001 transcribed_unprocessed_pseudogene Homo_sapiens 0.00000004 64
ENST00000621314 KRT123P-002 processed_transcript Homo_sapiens 0.0000002 60

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