C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm associated antigen 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374273 SPAG4-001 ENSG00000061656 9606 + 20:35615892-35621049 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374273
Transcript ID Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374273 0.613±0.00 0.517±0.40 0.350±0.00 1.362±0.00 0.289±0.00 1.232±0.43 0.972±0.00 4.508±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688
CIL_0005FU CIL_0005FU_0001 CGP 20:35615892-35664956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 TAS structural molecule activity
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0007283 TAS spermatogenesis
GO:0016021 IEA integral component of membrane
GO:0031514 IEA motile cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038860 Spag4-001 protein_coding Mus_musculus 0 1282
ENSMUST00000133511 Spag4-002 retained_intron Mus_musculus 0 843
ENSMUST00000136765 Spag4-004 retained_intron Mus_musculus 0 785
ENSMUST00000125996 Spag4-003 retained_intron Mus_musculus 0 688
ENSMUST00000137966 Spag4-005 protein_coding Mus_musculus 0 623
ENSMUST00000149139 Spag4-006 processed_transcript Mus_musculus 0 501

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