C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysophosphatidic acid receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374431 LPAR1-001 ENSG00000198121 9606 - 9:110873263-111038043 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374431
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374431 3.697±0.00 15.311±0.00 7.903±4.23 0.904±0.00 12.812±10.24 1.987±0.00 2.883±2.76 1.426±0.00 4.381±0.00 2.231±0.00 1.903±1.70 6.438±0.77 6.598±3.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016H CIL_00016H_0001 CGP 9:110668771-111038458
CIL_00093E CIL_00093E_0001 VISTA 9:110861070-111465765
CIL_00016L CIL_00016L_0001 CGP 9:110873263-111328520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000187 IEA activation of MAPK activity
GO:0001965 IEA G-protein alpha-subunit binding
GO:0004930 TAS:IEA G-protein coupled receptor activity
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007186 TAS:IEA G-protein coupled receptor signaling pathway
GO:0007202 TAS activation of phospholipase C activity
GO:0007204 TAS positive regulation of cytosolic calcium ion concentration
GO:0009986 IDA cell surface
GO:0010942 IEA positive regulation of cell death
GO:0010977 IEA negative regulation of neuron projection development
GO:0016021 IEA integral component of membrane
GO:0022008 IEA neurogenesis
GO:0030139 IDA endocytic vesicle
GO:0030165 IEA PDZ domain binding
GO:0032060 IEA bleb assembly
GO:0035025 IEA positive regulation of Rho protein signal transduction
GO:0042552 IEA myelination
GO:0043065 IEA positive regulation of apoptotic process
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043197 IEA dendritic spine
GO:0043198 IEA dendritic shaft
GO:0043410 IEA positive regulation of MAPK cascade
GO:0051482 IEA positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway
GO:0060999 IEA positive regulation of dendritic spine development
GO:0070915 IEA lysophosphatidic acid receptor activity
GO:0071453 IEA cellular response to oxygen levels
GO:0071673 IEA positive regulation of smooth muscle cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107574 Lpar1-004 protein_coding Mus_musculus 0 1483
ENSMUST00000107575 Lpar1-003 protein_coding Mus_musculus 0 1483
ENSMUST00000107571 Lpar1-002 protein_coding Mus_musculus 0 1483
ENSMUST00000055018 Lpar1-001 protein_coding Mus_musculus 0 1483
ENSMUST00000107570 Lpar1-005 protein_coding Mus_musculus 0 1421
ENSMUST00000155170 Lpar1-008 protein_coding Mus_musculus 0 292
ENSMUST00000147354 Lpar1-006 protein_coding Mus_musculus 0 226
ENSMUST00000145361 Lpar1-007 protein_coding Mus_musculus 1.00053e-42 180

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