C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374443 EIF6-005 ENSG00000242372 9606 - 20:35278911-35284770 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688
CIL_0002HV CIL_0002HV_0001 CGP 20:35226654-35284985
CIL_0002HS CIL_0002HS_0001 CGP 20:35278907-35292401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000054 IEA ribosomal subunit export from nucleus
GO:0003743 IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006413 IEA translational initiation
GO:0042256 IMP:IEA mature ribosome assembly
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0043022 IDA:IEA ribosome binding
GO:0043023 IEA ribosomal large subunit binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138962 Eif6-004 retained_intron Mus_musculus 0 699
ENSMUST00000129830 Eif6-007 nonsense_mediated_decay Mus_musculus 0 628
ENSMUST00000029142 Eif6-001 protein_coding Mus_musculus 0 569
ENSMUST00000154841 Eif6-008 nonsense_mediated_decay Mus_musculus 0 542

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