C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PALM2-AKAP2 readthrough
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374530 PALM2-AKAP2-001 ENSG00000157654 9606 + 9:109780309-110172512 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverENST00000374530
Transcript ID Brain Breast Heart Liver
ENST00000374530 1.951±0.00 18.144±0.00 5.922±2.33 1.225±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GE CIL_0001GE_0001 CGP 9:109375466-109946703
CIL_00016E CIL_00016E_0001 CGP 9:109640788-110172512
CIL_0007HX CIL_0007HX_0001 CGP 9:109780309-110172512

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008360 IEA regulation of cell shape
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150412 Palm2Akap2-001 protein_coding Mus_musculus 0 1857
ENSMUST00000098066 Palm2Akap2-002 nonsense_mediated_decay Mus_musculus 0 1857
ENSMUST00000043456 Akap2-003 protein_coding Mus_musculus 0 1857
ENSMUST00000107598 Akap2-201 protein_coding Mus_musculus 0 1567
ENSMUST00000098064 Akap2-002 protein_coding Mus_musculus 0 1567
ENSMUST00000107600 Akap2-005 protein_coding Mus_musculus 0 1567
ENSMUST00000102902 Akap2-001 protein_coding Mus_musculus 0 1266
ENSMUST00000102903 Akap2-004 protein_coding Mus_musculus 0 1266
ENSMUST00000102904 Palm2-001 protein_coding Mus_musculus 0 632
ENSMUST00000126465 Palm2Akap2-003 nonsense_mediated_decay Mus_musculus 0 625
ENSMUST00000142556 Palm2-002 nonsense_mediated_decay Mus_musculus 0 625
ENSMUST00000102905 Palm2-003 protein_coding Mus_musculus 0 520
ENSMUST00000124581 Akap2-007 protein_coding Mus_musculus 0 518
ENSMUST00000131201 Palm2-004 retained_intron Mus_musculus 0 440
ENSMUST00000132497 Akap2-006 protein_coding Mus_musculus 0 422
ENSMUST00000098065 Akap2-008 processed_transcript Mus_musculus 0 202

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