C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ectodysplasin-A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113778 Eda-005 ENSMUSG00000059327 10090 + X:99975606-100400762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113778 0.711±0.00 1.056±0.20 0.441±0.00 0.287±0.06 0.905±0.17 0.167±0.00 0.375±0.01 0.191±0.13 0.161±0.03 0.181±0.10 0.286±0.17 0.790±0.37 0.418±0.37 0.067±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YI CIL_0000YI_0003 CGP X:99821021-100400762
CIL_0002RK CIL_0002RK_0002 CGP X:99975606-100442717

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001942 IGI hair follicle development
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005576 IEA extracellular region
GO:0005581 IEA collagen trimer
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006955 IEA immune response
GO:0007160 IDA cell-matrix adhesion
GO:0010467 IMP gene expression
GO:0030154 IEA cell differentiation
GO:0042346 IDA positive regulation of NF-kappaB import into nucleus
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043473 IMP pigmentation
GO:0043588 IMP skin development
GO:0045177 IDA apical part of cell
GO:0060662 IDA salivary gland cavitation
GO:0060789 IGI hair follicle placode formation
GO:0061153 IMP trachea gland development
GO:0090263 IMP positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338901 EDA-201 protein_coding Homo_sapiens 0 708
ENST00000374548 EDA-003 retained_intron Homo_sapiens 0 852
ENST00000374552 EDA-002 protein_coding Homo_sapiens 0 2124
ENST00000374553 EDA-001 protein_coding Homo_sapiens 0 2152
ENST00000502251 EDA-004 processed_transcript Homo_sapiens 0 708
ENST00000503592 EDA-005 protein_coding Homo_sapiens 0 549
ENST00000524573 EDA-008 protein_coding Homo_sapiens 0 1844
ENST00000525810 EDA-007 protein_coding Homo_sapiens 0 708
ENST00000527388 EDA-009 protein_coding Homo_sapiens 0 708
ENST00000533317 EDA-010 retained_intron Homo_sapiens 0 708
ENST00000616899 EDA-202 protein_coding Homo_sapiens 0 1421

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