C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras-related GTP binding B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374941 RRAGB-002 ENSG00000083750 9606 + X:55717739-55758774 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374941
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374941 1.870±0.00 2.831±0.00 4.313±2.18 2.497±0.00 2.839±2.39 1.804±0.00 1.275±0.99 0.790±0.00 2.458±0.00 0.829±0.70 5.199±4.47 3.097±0.53 3.924±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057B CIL_00057B_0001 CGP X:55623400-55758774
CIL_0006LJ CIL_0006LJ_0001 CGP X:55717739-56287889

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA:IDA GTP binding
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0005764 IDA lysosome
GO:0005765 IDA lysosomal membrane
GO:0005794 IDA Golgi apparatus
GO:0007264 IEA small GTPase mediated signal transduction
GO:0032008 IMP positive regulation of TOR signaling
GO:0032561 IDA guanyl ribonucleotide binding
GO:0034613 IMP cellular protein localization
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0071230 IMP cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039720 Rragb-001 protein_coding Mus_musculus 0 1498
ENSMUST00000091064 Rraga-001 protein_coding Mus_musculus 0 953
ENSMUST00000144175 Rragb-002 protein_coding Mus_musculus 0 536

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