C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box E1 (thyroid transcription factor 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375123 FOXE1-001 ENSG00000178919 9606 + 9:97853254-97856715 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000375123
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000375123 0.014±0.00 0.016±0.00 0.036±0.00 0.019±0.00 0.030±0.00 0.147±0.00 0.156±0.00 0.158±0.09 0.613±0.76 0.300±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0001 VISTA 9:97562581-98164397
CIL_000853 CIL_000853_0001 VISTA 9:97573936-98178227
CIL_0009AR CIL_0009AR_0001 VISTA 9:97573936-98175680
CIL_00029U CIL_00029U_0001 CGP 9:97674909-97856715
CIL_00029R CIL_00029R_0001 CGP 9:97853254-97922570

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IDA DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006590 ISS thyroid hormone generation
GO:0009653 NAS anatomical structure morphogenesis
GO:0016477 ISS cell migration
GO:0030878 IEP thyroid gland development
GO:0031069 ISS hair follicle morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048538 IEP thymus development
GO:0048562 ISS embryonic organ morphogenesis
GO:0060022 IMP hard palate development
GO:0060023 IMP soft palate development
GO:0060465 IEP pharynx development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095097 Foxe1-001 protein_coding Mus_musculus 0 1177
ENSMUST00000050940 Foxe3-001 protein_coding Mus_musculus 0 302
ENSDART00000018764 foxl1-001 protein_coding Danio_rerio 1e-21 110

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