C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00029U_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136936-ENSG00000178919 CGP 9606 9:97674909-97856715
GeneTranscriptPositionBiotype
ENSG00000136936 (XPA)
xeroderma pigmentosum, complementation group A 		ENST00000375128 (XPA-001) 97674909-97697357 protein_coding
ENST00000462523 (XPA-003) 97674909-97697293 nonsense_mediated_decay
ENST00000485042 (XPA-004) 97675067-97675955 processed_transcript
ENST00000496104 (XPA-002) 97684961-97697295 processed_transcript
ENSG00000178919 (FOXE1)
forkhead box E1 (thyroid transcription factor 2) 		ENST00000375123 (FOXE1-001) 97853254-97856715 protein_coding
ENSG00000214417 (KRT18P13)
keratin 18 pseudogene 13 		ENST00000400056 (KRT18P13-001) 97698922-97700734 processed_pseudogene
ENSG00000260677 (RP11-546O6.4)
 ENST00000562653 (RP11-546O6.4-001) 97743208-97744935 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00029U_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028329-ENSMUSG00000070990 CGP 10090 4:46155347-46346412
GeneTranscriptPositionBiotype
ENSMUSG00000028329 (Xpa)
xeroderma pigmentosum, complementation group A 		ENSMUST00000030013 (Xpa-001) 46175222-46196311 protein_coding
ENSMUST00000058232 (Xpa-002) 46155347-46196311 protein_coding
ENSMUST00000130051 (Xpa-006) 46184412-46186594 processed_transcript
ENSMUST00000132358 (Xpa-005) 46175222-46185649 nonsense_mediated_decay
ENSMUST00000141318 (Xpa-004) 46175222-46185682 processed_transcript
ENSMUST00000142380 (Xpa-003) 46182969-46196304 protein_coding
ENSMUSG00000028330 (Ncbp1)
nuclear cap binding protein subunit 1 		ENSMUST00000030014 (Ncbp1-001) 46138613-46172403 protein_coding
ENSMUST00000131187 (Ncbp1-003) 46157901-46160099 processed_transcript
ENSMUST00000133286 (Ncbp1-002) 46165196-46171979 processed_transcript
ENSMUSG00000070990 (Foxe1)
forkhead box E1 		ENSMUST00000095097 (Foxe1-001) 46343609-46346412 protein_coding
ENSMUSG00000080816 (Gm12447)
predicted gene 12447 		ENSMUST00000119110 (Gm12447-001) 46327296-46327765 processed_pseudogene
ENSMUSG00000082194 (Gm12444)
predicted gene 12444 		ENSMUST00000121512 (Gm12444-001) 46243014-46243890 processed_pseudogene
ENSMUSG00000087383 (Gm12446)
predicted gene 12446 		ENSMUST00000123933 (Gm12446-001) 46300007-46343431 antisense
ENSMUST00000152069 (Gm12446-002) 46328464-46345515 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00029U_0001ENSG00000136936ENST00000375128ENST00000462523ENST00000485042ENST00000496104ENSG00000178919ENST00000375123ENSG00000214417ENST00000400056ENSG00000260677ENST00000562653CIL_00029U_0002ENSMUSG00000028329ENSMUST00000030013ENSMUST00000058232ENSMUST00000130051ENSMUST00000132358ENSMUST00000141318ENSMUST00000142380ENSMUSG00000028330ENSMUST00000030014ENSMUST00000131187ENSMUST00000133286ENSMUSG00000070990ENSMUST00000095097ENSMUSG00000080816ENSMUST00000119110ENSMUSG00000082194ENSMUST00000121512ENSMUSG00000087383ENSMUST00000123933ENSMUST00000152069
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00029U_0001ENSG00000136936ENST00000375128ENST00000462523ENST00000485042ENST00000496104ENSG00000178919ENST00000375123ENSG00000214417ENST00000400056ENSG00000260677ENST00000562653CIL_00029U_0002ENSMUSG00000028329ENSMUST00000030013ENSMUST00000132358ENSMUST00000142380ENSMUSG00000028330ENSMUST00000030014ENSMUST00000133286ENSMUSG00000070990ENSMUST00000095097ENSMUSG00000080816ENSMUST00000119110ENSMUSG00000082194ENSMUST00000121512ENSMUSG00000087383ENSMUST00000123933ENSMUST00000152069
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136936 ENST00000375128 5.501±0.00 7.305±0.00 0.565±0.00 5.490±3.50 5.742±3.31 3.447±2.41 1.274±0.69 3.402±1.98 3.279±0.13 1.732±0.12 1.866±0.95 5.505±2.41 2.833±0.16 5.722±0.61
ENST00000462523 N/A N/A N/A N/A N/A N/A 0.440±0.00 1.546±0.00 N/A 0.525±0.00 N/A 1.251±0.31 0.328±0.00 1.650±0.00
ENST00000485042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.081±0.00 N/A N/A
ENST00000496104 3.920±0.00 N/A N/A N/A N/A N/A 1.788±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000178919 ENST00000375123 0.014±0.00 N/A N/A 0.016±0.00 0.036±0.00 0.019±0.00 N/A 0.030±0.00 0.147±0.00 0.156±0.00 0.158±0.09 0.613±0.76 N/A 0.300±0.11
ENSG00000214417 ENST00000400056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 0.134±0.00
ENSG00000260677 ENST00000562653 0.063±0.00 0.223±0.00 N/A 0.131±0.00 0.118±0.00 N/A 0.064±0.05 0.187±0.00 0.005±0.00 0.010±0.00 N/A 0.022±0.01 0.021±0.00 0.067±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028329 ENSMUST00000030013 N/A 21.191±3.18 18.522±1.08 N/A 19.672±2.72 14.451±3.34 N/A 18.819±4.37 9.631±0.77 22.321±3.36 N/A 36.796±6.55 N/A N/A
ENSMUST00000058232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.633±0.00 17.097±0.00 N/A
ENSMUST00000141318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142380 21.183±0.00 N/A N/A N/A N/A 16.263±0.00 N/A N/A N/A N/A N/A 29.230±6.81 N/A N/A
ENSMUSG00000028330 ENSMUST00000030014 14.926±1.94 10.715±1.48 12.812±1.07 26.010±9.18 12.462±1.50 10.330±1.14 N/A 8.179±0.28 15.376±12.49 10.638±0.16 N/A 18.763±2.11 23.967±10.22 68.630±16.78
ENSMUST00000131187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 93.123±0.00
ENSMUSG00000070990 ENSMUST00000095097 N/A 0.097±0.03 0.004±0.00 0.011±0.00 0.017±0.00 0.027±0.01 N/A N/A 0.022±0.01 0.199±0.27 N/A 0.050±0.02 0.017±0.01 0.019±0.01
ENSMUSG00000080816 ENSMUST00000119110 N/A N/A 0.072±0.00 0.123±0.10 0.160±0.00 N/A N/A N/A 0.027±0.01 N/A N/A N/A 0.015±0.00 0.107±0.00
ENSMUSG00000082194 ENSMUST00000121512 0.077±0.03 N/A N/A 0.333±0.29 0.158±0.00 0.147±0.01 0.117±0.02 N/A 0.042±0.00 0.099±0.00 N/A 0.240±0.04 0.032±0.00 0.295±0.34
ENSMUSG00000087383 ENSMUST00000123933 N/A N/A N/A N/A N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152069 N/A N/A N/A 0.340±0.00 N/A 0.086±0.00 N/A N/A 0.018±0.00 N/A N/A 0.087±0.00 0.067±0.02 0.140±0.00

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