C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sp5 transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375281 SP5-001 ENSG00000204335 9606 + 2:170715351-170718078 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375281
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375281 4.247±0.00 0.182±0.00 0.046±0.01 0.463±0.27 0.304±0.23 0.017±0.00 0.478±0.24 0.401±0.19 0.163±0.14 0.080±0.00 10.344±12.86 0.881±0.76 1.120±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SG CIL_0004SG_0001 CGP 2:170178145-170718078
CIL_0004SA CIL_0004SA_0001 CGP 2:170715351-170798971

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0036342 IEA post-anal tail morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0060349 IEA bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100043 Sp5-001 protein_coding Mus_musculus 0 1746
ENSMUST00000090813 Sp9-001 protein_coding Mus_musculus 0 327
ENSMUST00000063918 Sp8-201 protein_coding Mus_musculus 0 305
ENSDART00000024283 sp5l-201 protein_coding Danio_rerio 6e-38 163

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