C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004SG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000071909-ENSG00000204335 CGP 9606 2:170178145-170718078
GeneTranscriptPositionBiotype
ENSG00000204335 (SP5)
Sp5 transcription factor 		ENST00000375281 (SP5-001) 170715351-170718078 protein_coding
ENST00000487037 (SP5-002) 170716042-170716488 processed_transcript
ENSG00000213981 (AC007277.3)
 ENST00000423519 (AC007277.3-002) 170618628-170643944 antisense
ENST00000428156 (AC007277.3-001) 170640374-170695374 antisense
ENSG00000214821 (HMGB1P4)
high mobility group box 1 pseudogene 4 		ENST00000455362 (HMGB1P4-001) 170601662-170602228 processed_pseudogene
ENSG00000222033 (LINC01124)
long intergenic non-protein coding RNA 1124 		ENST00000409786 (LINC01124-001) 170712451-170714567 lincRNA
CIL_0004SG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042064-ENSMUSG00000075304 CGP 10090 2:70039126-70477729
GeneTranscriptPositionBiotype
ENSMUSG00000042064 (Myo3b)
myosin IIIB 		ENSMUST00000060208 (Myo3b-201) 70039126-70429195 protein_coding
ENSMUST00000112241 (Myo3b-001) 70096298-70183267 protein_coding
ENSMUST00000112243 (Myo3b-002) 70083074-70429198 protein_coding
ENSMUSG00000047965 (Rpl9-ps7)
ribosomal protein L9, pseudogene 7 		ENSMUST00000140507 (Rpl9-ps7-001) 70458982-70459560 processed_pseudogene
ENSMUSG00000075304 (Sp5)
trans-acting transcription factor 5 		ENSMUST00000100043 (Sp5-001) 70474923-70477729 protein_coding
ENSMUSG00000086132 (Gm13631)
predicted gene 13631 		ENSMUST00000140978 (Gm13631-001) 70038911-70042406 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SG_0001ENSG00000204335ENST00000375281ENST00000487037ENSG00000213981ENST00000423519ENST00000428156ENSG00000214821ENST00000455362ENSG00000222033ENST00000409786CIL_0004SG_0002ENSMUSG00000042064ENSMUST00000060208ENSMUST00000112241ENSMUST00000112243ENSMUSG00000047965ENSMUST00000140507ENSMUSG00000075304ENSMUST00000100043ENSMUSG00000086132ENSMUST00000140978
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SG_0001ENSG00000204335ENST00000375281ENST00000487037ENSG00000213981ENST00000423519ENST00000428156ENSG00000214821ENST00000455362ENSG00000222033ENST00000409786CIL_0004SG_0002ENSMUSG00000042064ENSMUST00000060208ENSMUST00000112241ENSMUST00000112243ENSMUSG00000047965ENSMUST00000140507ENSMUSG00000075304ENSMUST00000100043ENSMUSG00000086132ENSMUST00000140978
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000204335 ENST00000375281 4.247±0.00 0.182±0.00 N/A 0.046±0.01 0.463±0.27 0.304±0.23 0.017±0.00 0.478±0.24 0.401±0.19 0.163±0.14 0.080±0.00 10.344±12.86 0.881±0.76 1.120±0.32
ENST00000487037 N/A 0.570±0.00 N/A N/A 0.795±0.00 N/A N/A N/A N/A N/A 0.358±0.00 N/A N/A N/A
ENSG00000213981 ENST00000423519 0.092±0.00 0.194±0.00 N/A 0.226±0.19 0.118±0.00 0.084±0.00 0.156±0.00 0.390±0.00 0.919±0.00 0.144±0.02 N/A 0.262±0.19 N/A 0.244±0.06
ENST00000428156 0.076±0.00 0.087±0.00 0.050±0.00 0.097±0.00 0.034±0.00 0.016±0.00 N/A N/A N/A N/A N/A 0.057±0.05 N/A 0.027±0.00
ENSG00000214821 ENST00000455362 0.022±0.00 N/A N/A 0.047±0.00 0.047±0.00 N/A 0.088±0.00 0.048±0.00 N/A N/A 0.043±0.00 0.028±0.00 0.029±0.00 0.076±0.05
ENSG00000222033 ENST00000409786 1.065±0.00 0.248±0.00 0.038±0.00 0.160±0.00 0.128±0.03 0.103±0.00 0.013±0.00 0.250±0.15 0.424±0.38 0.106±0.09 0.095±0.00 0.690±0.67 0.084±0.04 0.293±0.11
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042064 ENSMUST00000060208 0.002±0.00 0.002±0.00 N/A 0.033±0.00 0.030±0.02 N/A 0.001±0.00 0.596±0.26 0.000±0.00 0.127±0.04 0.003±0.00 0.423±0.26 0.002±0.00 0.487±0.00
ENSMUST00000112241 N/A N/A 0.034±0.00 N/A 0.102±0.00 0.065±0.00 N/A N/A 0.004±0.00 0.117±0.01 N/A 0.568±0.19 0.019±0.00 N/A
ENSMUST00000112243 0.494±0.48 0.024±0.02 0.011±0.00 0.232±0.00 0.046±0.02 N/A 0.004±0.00 0.462±0.08 0.002±0.00 0.163±0.00 0.003±0.00 0.411±0.18 0.017±0.02 0.109±0.08
ENSMUSG00000047965 ENSMUST00000140507 4.143±0.50 N/A 4.763±0.64 1.178±0.71 1.203±0.72 0.516±0.25 0.635±0.40 0.530±0.26 3.853±4.13 0.672±0.24 1.106±0.48 2.063±1.71 1.933±1.81 0.349±0.18
ENSMUSG00000075304 ENSMUST00000100043 1.527±1.07 3.442±0.40 0.125±0.03 4.377±3.01 0.051±0.02 0.161±0.08 0.030±0.01 2.251±0.82 0.456±0.38 2.452±0.41 0.038±0.00 1.520±0.51 0.215±0.12 0.073±0.05
ENSMUSG00000086132 ENSMUST00000140978 N/A N/A N/A N/A N/A 0.156±0.06 N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A

Loading