C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pseudouridylate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376649 PUS1-001 ENSG00000177192 9606 + 12:131929223-131945896 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376649
Transcript ID Adipose Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376649 0.502±0.00 0.035±0.00 0.902±0.00 0.459±0.18 0.770±0.66 1.062±0.00 0.462±0.00 0.100±0.00 1.382±0.56 0.587±0.18 1.217±0.28

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0004730 NAS pseudouridylate synthase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IEA nucleolus
GO:0005739 IEA mitochondrion
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0031119 IEA tRNA pseudouridine synthesis
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170468 Pus1-201 protein_coding Mus_musculus 0 1136
ENSMUST00000031481 Pus1-003 protein_coding Mus_musculus 0 1136
ENSMUST00000031483 Pus1-001 protein_coding Mus_musculus 0 1136
ENSMUST00000112426 Pus1-004 protein_coding Mus_musculus 0 935
ENSMUST00000086643 Pus1-002 protein_coding Mus_musculus 0 933
ENSMUST00000136483 Pus1-005 protein_coding Mus_musculus 0 346
ENSMUST00000149208 Pus1-006 protein_coding Mus_musculus 0 206
ENSMUST00000171143 Fam102b-201 protein_coding Mus_musculus 0.00002 57
ENSMUST00000046924 Fam102b-001 protein_coding Mus_musculus 0.00002 57
ENSMUST00000021800 Mcur1-201 protein_coding Mus_musculus 0.0003 53

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