C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: arginine-glutamic acid dipeptide (RE) repeats
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377464 RERE-002 ENSG00000142599 9606 - 1:8352406-8525939 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverLungMuscleOvaryPlacentaTestisENST00000377464
Transcript ID Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000377464 7.941±0.00 0.656±0.00 1.949±1.19 3.259±0.00 7.881±0.00 6.531±3.28 3.774±0.00 5.819±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0001 VISTA 1:7770379-8371827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105680 Rere-003 protein_coding Mus_musculus 0 5384
ENSMUST00000105682 Rere-001 protein_coding Mus_musculus 0 5145
ENSMUST00000136646 Rere-007 protein_coding Mus_musculus 0 1066

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