C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: arginine glutamic acid dipeptide (RE) repeats
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105680 Rere-003 ENSMUSG00000039852 10090 + 4:150488393-150621962 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105680
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105680 7.972±1.89 13.698±3.61 10.554±6.93 9.016±4.02 9.647±2.85 10.017±1.40 3.184±1.34 13.143±1.62 1.645±1.04 8.807±1.34 10.017±4.56 5.888±4.09 5.197±0.84 2.867±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MK CIL_0003MK_0002 CGP 4:150236721-150621966

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IPI histone deacetylase complex
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0006338 IPI chromatin remodeling
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337907 RERE-001 protein_coding Homo_sapiens 0 5145
ENST00000377464 RERE-002 protein_coding Homo_sapiens 0 5384
ENST00000400907 RERE-015 protein_coding Homo_sapiens 0 1166
ENST00000400908 RERE-014 protein_coding Homo_sapiens 0 4774
ENST00000464367 RERE-012 non_stop_decay Homo_sapiens 0 392
ENST00000464972 RERE-007 protein_coding Homo_sapiens 0 553
ENST00000476556 RERE-003 protein_coding Homo_sapiens 0 4626
ENST00000480342 RERE-010 retained_intron Homo_sapiens 0 521
ENST00000488215 RERE-013 protein_coding Homo_sapiens 0 676
ENST00000505225 RERE-018 protein_coding Homo_sapiens 0 359
ENST00000507012 RERE-017 processed_transcript Homo_sapiens 0 246

Loading